View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5260_low_3 (Length: 550)
Name: NF5260_low_3
Description: NF5260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5260_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 17 - 539
Target Start/End: Original strand, 29240389 - 29240906
Alignment:
| Q |
17 |
atttctacacaaaaaagagcttatttcaatgctcataaggatgaggagtggtacatatctttatattctctattctctaacaatctgtagttttcaatct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29240389 |
atttctacacaaaaaagagcttatttcaatgctcataaggatgaggagtgatacatatctttatattctctattctctaacaatctgtagttttcaatct |
29240488 |
T |
|
| Q |
117 |
ttaaatgtttactgtcaaactatgaattgccgtatttttgtaagtccacacaatctgatgttgaattttgtttctcgttttactttttatataggttgaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
29240489 |
ttaaatgtttactgtcaaactatgaattgccgtatttttggatgtccacacaatctgatgttgaattccgtttctcgttttgctttttatataggttgaa |
29240588 |
T |
|
| Q |
217 |
agataaatatcatccaacaaatttgcttacagtcattgaaaggtaattattacnnnnnnnnatttcaattttagagttctattgaaaagcataacgtatt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29240589 |
agataaatatcatccaacaaatttgcttacagtcattgaaaggtaattattacttttttt-atttcaattttagagttctattgaaaagcataacgtatt |
29240687 |
T |
|
| Q |
317 |
gtcctgctaatcttaatagatcatttttatttttgtgaggggttcttactagatagatagataggtggattctaatttttatttcttcatatcttttagg |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29240688 |
gtcctgctaatcttaatagatcatttttatttttgtgaggggttcttactaga----tagataggtggattctaatttttatttcttcatatcttttagg |
29240783 |
T |
|
| Q |
417 |
cgaatgaaagtgctcgacaactagtaaaggattttttgcttgatttgcaaagtggaacattagatctgtaagttcttgtcctcgtttttacttactcttg |
516 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29240784 |
cgaatgaaagtgctcgacagctggtaaaggattttttgcttgatttgcaaagtggaacattagatctgtaagttcttgtcctcgtttttacttactcttg |
29240883 |
T |
|
| Q |
517 |
tttgtgcgatcaatttggccttc |
539 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
29240884 |
tttgtgcgatcaatttggccttc |
29240906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 523
Target Start/End: Original strand, 16827925 - 16828433
Alignment:
| Q |
17 |
atttctacacaaaaaagagcttatttcaatgctcataaggatgaggagtggtacatatctttatattctctattctctaacaatctgtagttttcaatct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| || | |||| ||||||||||||||||| |
|
|
| T |
16827925 |
atttctacacaaaaaagagcttatttcagtgctcataaggatgaggagtggtacgtatctttatattctctgttataaaacagtctgtagttttcaatct |
16828024 |
T |
|
| Q |
117 |
ttaaatgtttactgtcaaactatgaattgccgtatttttgtaagtccacacaatctgatgttgaattttgtttctcgttttactttttatataggttgaa |
216 |
Q |
| |
|
|||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
16828025 |
ttaaatgtttcctgtaaaactatgaattgccatatttttgtaagtccacacaatctgatgttgatttccctttctcgttttactttttatataggttgaa |
16828124 |
T |
|
| Q |
217 |
agataaatatcatccaacaaatttgcttacagtcattgaaaggtaattatta-----cnnnnnnnnatttcaattttagagttctattgaaaagcataac |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||| |||||||||||||| |||||| |
|
|
| T |
16828125 |
agataaatatcatccaacaaatttgcttacagtcattgaaaggtaattcttattattattttttttatatcaattttacagttctattgaaaaacataac |
16828224 |
T |
|
| Q |
312 |
gtattgtcctgctaatcttaatagatcatttttatttttgtgaggggttcttactagatagatagataggtggattctaatttttatttcttcatatctt |
411 |
Q |
| |
|
|| |||||||| |||||||||| |||||||||||||||| || ||||| ||||| | |||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
16828225 |
gtgttgtcctgttaatcttaatggatcatttttatttttatggggggtgcttac----tcgataaataggtggattctaatttttatttcttcatatatt |
16828320 |
T |
|
| Q |
412 |
ttagg-cgaatgaaagtgctcgacaactagtaaaggattttttgcttgatttgcaaagtggaacattagatctgtaagttcttgtcctcgtttttactta |
510 |
Q |
| |
|
||||| |||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
16828321 |
ttaggaggaatgaaagtgctcgacagctggcaaaggattttttgcttgatttgcaaagtggaacattagatccgtaagttcttgtcctcttttttactta |
16828420 |
T |
|
| Q |
511 |
ctcttgtttgtgc |
523 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
16828421 |
cgcttgtttgtgc |
16828433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 846427 - 846375
Alignment:
| Q |
208 |
taggttgaaagataaatatcatccaacaaatttgcttacagtcattgaaaggt |
260 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
846427 |
taggttgaaagataagtatcatccaacaaatttacttacagtaattgaaaggt |
846375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 442 - 499
Target Start/End: Complemental strand, 846199 - 846142
Alignment:
| Q |
442 |
aaaggattttttgcttgatttgcaaagtggaacattagatctgtaagttcttgtcctc |
499 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||| |||| ||| |||||||| |
|
|
| T |
846199 |
aaaggagtttttgcttgatttgcaaagtggaacactagacatgtatgtttttgtcctc |
846142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University