View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5260_low_4 (Length: 523)
Name: NF5260_low_4
Description: NF5260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5260_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 14 - 505
Target Start/End: Original strand, 1021089 - 1021584
Alignment:
| Q |
14 |
catcatttcaataaacctaaccaacctagatatcatagcacttcagattaactaacacttgcactt-gtttttcaagttctt-gtttcccttcaaaacct |
111 |
Q |
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||||| |||| ||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
1021089 |
catcacttcagtaaacctaaccaacctagata-----gcacttcagattaac----acttgcactttgtttttcaagttctttgtttcccttcaaaacct |
1021179 |
T |
|
| Q |
112 |
tcttcaacatttgtttttgtttaatatacgcatacacacgttcaaata-----------tacggtatatatataccacctgaaacaatgggttgtacggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || || |
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| T |
1021180 |
tcttcaacatttgtttttgtttaatatacgcatacagacgttcaaatacgtgtataatatacggtatatatataccacctgaaacaatgggttgcactgt |
1021279 |
T |
|
| Q |
201 |
gtctaaactcgacaacgaagaaacggtacgacggtgcaaagaacgccgccgtctcatgaaggaagcactttacgctcgccactacctcgcagcggctcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1021280 |
gtctaaactcgacaacgaagaaacggtacgacggtgcaaagaacgccgccgtctcatgaaggaagcactttacgctcgccactacctcgcagcggctcat |
1021379 |
T |
|
| Q |
301 |
tctgattactgtaactctcttcgcctcaccggttccgcactctccactttcgccgccggtgaacctctcgccgtctccgacgacattcccgctgttttca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1021380 |
tctgattactgtaactctcttcgcctcaccggttccgcactctccactttcgccgccggtgaacctctctccgtctccgacgacattcccgctgttttca |
1021479 |
T |
|
| Q |
401 |
tcaacacagttaaaacttgtcagacaccgccacctcctcctactccttccgccgtaacaaacacaaaactccgtacagtttctgaaatacgtcgccggaa |
500 |
Q |
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| T |
1021480 |
tcaacacagttaaaacttgtcagacaccgccacctcctcctactccttccgccgtaacaaacacaaaactccgtacagtttctgaaatacgtcgccggaa |
1021579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 297 - 417
Target Start/End: Original strand, 4970737 - 4970857
Alignment:
| Q |
297 |
tcattctgattactgtaactctcttcgcctcaccggttccgcactctccactttcgccgccggtgaacctctcgccgtctccgacgacattcccgctgtt |
396 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||| ||||||||||||||| ||| |
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| T |
4970737 |
tcattctgattactataactctcttcgcctcaccggttccgcactctccaccttcgctgccagtgaacctctcgccgtcttcgacgacattcccgccgtt |
4970836 |
T |
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| Q |
397 |
ttcatcaacacagttaaaact |
417 |
Q |
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||| |||||||||| |||||| |
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| T |
4970837 |
ttcgtcaacacagtaaaaact |
4970857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 297 - 417
Target Start/End: Complemental strand, 6345091 - 6344971
Alignment:
| Q |
297 |
tcattctgattactgtaactctcttcgcctcaccggttccgcactctccactttcgccgccggtgaacctctcgccgtctccgacgacattcccgctgtt |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| ||| |
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| T |
6345091 |
tcattctgattactgtaactctcttcgcctcaccggttccgcactctccaccttcgccgccagtgaacctctcgtcgtctccgacgacattcccgccgtt |
6344992 |
T |
|
| Q |
397 |
ttcatcaacacagttaaaact |
417 |
Q |
| |
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||| |||||||||| |||||| |
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| T |
6344991 |
ttcgtcaacacagtaaaaact |
6344971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 214 - 405
Target Start/End: Complemental strand, 31344725 - 31344534
Alignment:
| Q |
214 |
aacgaagaaacggtacgacggtgcaaagaacgccgccgtctcatgaaggaagcactttacgctcgccactacctcgcagcggctcattctgattactgta |
313 |
Q |
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|||||||| || || |||||||||||||| || |||||||| ||||| ||||| | || ||||| || ||||||| || ||||| || || ||||| |
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| T |
31344725 |
aacgaagatacagtgcgacggtgcaaagaccgtcgccgtcttatgaaagaagctgtctatgctcgtcatcacctcgccgctgctcactccgactactgcc |
31344626 |
T |
|
| Q |
314 |
actctcttcgcctcaccggttccgcactctccactttcgccgccggtgaacctctcgccgtctccgacgacattcccgctgttttcatcaac |
405 |
Q |
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|| || || |||||||| |||| ||||||||||||||| |||||||||||||| |||| || || ||| |||||| |||||||||||| |
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| T |
31344625 |
gttccctccgtctcaccggcaccgccctctccactttcgcctccggtgaacctctctccgtttctgataacactcccgccgttttcatcaac |
31344534 |
T |
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