View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5260_low_7 (Length: 319)

Name: NF5260_low_7
Description: NF5260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5260_low_7
NF5260_low_7
[»] chr5 (1 HSPs)
chr5 (10-319)||(13891977-13892286)


Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 10 - 319
Target Start/End: Complemental strand, 13892286 - 13891977
Alignment:
Q  10 attatactaacttaccactttcnnnnnnngttattatattaaaaacttcaccaaaatttagtaacttttatcttctaatatctaagattttgtgatgccc 109  Q
    |||| |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13892286 attacactaacttaccactttctttttttgttattatattaaaaacttcaccaaaatttagtaacttttatcttctaatatctaagattttgtgatgccc 13892187  T
Q  110 aacatttagtttatgcagattggtgttttttgttgatgcaatataatgaattgtgattgtttgtttgtgtaatgtagaagttggaatataaatttcagct 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13892186 aacatttagtttatgcagattggtgttttttgttgatgcaatataatgaattgtgattgtttgtttgtgtaatgtagaagttggaatataaatttcagct 13892087  T
Q  210 gggtagatgcctcgatggagcatgagaaggagaaaaaacaagaagaagcaacataagaatatggctattgaggatagagaaacagctcatagggatcaga 309  Q
    |||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  13892086 gggtagatacctagatggagcatgagaaggagaaaaaacaagaacaagcaacataagaatatggctattgaggatagagaaacagcccatagggatcaga 13891987  T
Q  310 atttggtaaa 319  Q
    ||||||||||    
T  13891986 atttggtaaa 13891977  T

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