View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5261-Insertion-2 (Length: 655)
Name: NF5261-Insertion-2
Description: NF5261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5261-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-169; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 7 - 408
Target Start/End: Complemental strand, 14803792 - 14803378
Alignment:
| Q |
7 |
atttttagataaggaaaaacgttttgccttatacttttacatcctgaatctaactataggaagtttagtaacttttgccataagggatttgtccaatgca |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14803792 |
atttttagataaggaaaaacgttttgccttatacttttacatcctgaatctaactataggaagtttagtaacttttgccataagggatttgtccaatgca |
14803693 |
T |
|
| Q |
107 |
tagaaatctgcaaacatacatgaatgcaatttttgatacgaatctacaatgtagatattttaaatttaaatgaatgtcataaacttggtataaaaattgt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14803692 |
tagaaatctgcaaacatacatgaatgcaatttttgatacgaatctacaatgtagatattttaaatttaaatgaatgtcataaacttggtataaaaattgt |
14803593 |
T |
|
| Q |
207 |
cttcgtcaaagatattaaagtattcttaaattgcttatctca-tattctacattgcaagctttt-ctatttctccaattt-ctgcaaagtt-atgctcat |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||| |
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| T |
14803592 |
cttcgtcaaagatattaaagtattcttaaattgcttatctcaatattctacattgcaagcttttactatttctccaattttctgcaaagtttatgctcat |
14803493 |
T |
|
| Q |
303 |
a-agtcaacatggcgttt--aattgatcaccttga-attctgc-ttgcaagc-ttaccatttcttgcaa-ccctaagcttt-gagaacagttg--aactg |
392 |
Q |
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| T |
14803492 |
atagtcaacatggcgttttaaattgatcaccttgatattctgcattgcaagccttaccatttcttgcaaaccctaagcttttgaga-cagtttgaaactg |
14803394 |
T |
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| Q |
393 |
tggtagctccatagaa |
408 |
Q |
| |
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|||||||||||||||| |
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| T |
14803393 |
tggtagctccatagaa |
14803378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 7 - 408
Target Start/End: Complemental strand, 15250786 - 15250372
Alignment:
| Q |
7 |
atttttagataaggaaaaacgttttgccttatacttttacatcctgaatctaactataggaagtttagtaacttttgccataagggatttgtccaatgca |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15250786 |
atttttagataaggaaaaacgttttgccttatacttttacatcctgaatctaactataggaagtttagtaacttttgccataagggatttgtccaatgca |
15250687 |
T |
|
| Q |
107 |
tagaaatctgcaaacatacatgaatgcaatttttgatacgaatctacaatgtagatattttaaatttaaatgaatgtcataaacttggtataaaaattgt |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15250686 |
tagaaatctgcaaacatacatgaatgcaatttttgatacgaatctacaatgtagatattttaaatttaaatgaatgtcataaacttggtataaaaattgt |
15250587 |
T |
|
| Q |
207 |
cttcgtcaaagatattaaagtattcttaaattgcttatctca-tattctacattgcaagctttt-ctatttctccaattt-ctgcaaagtt-atgctcat |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||| |
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| T |
15250586 |
cttcgtcaaagatattaaagtattcttaaattgcttatctcaatattctacattgcaagcttttactatttctccaattttctgcaaagtttatgctcat |
15250487 |
T |
|
| Q |
303 |
a-agtcaacatggcgttt--aattgatcaccttga-attctgc-ttgcaagc-ttaccatttcttgcaa-ccctaagcttt-gagaacagttg--aactg |
392 |
Q |
| |
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| |||||||||||||||| ||||||||||||||| ||||||| |||||||| |||||||||||||||| ||||||||||| |||| ||||| ||||| |
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| T |
15250486 |
atagtcaacatggcgttttaaattgatcaccttgatattctgcattgcaagccttaccatttcttgcaaaccctaagcttttgaga-cagtttgaaactg |
15250388 |
T |
|
| Q |
393 |
tggtagctccatagaa |
408 |
Q |
| |
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|||||||||||||||| |
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| T |
15250387 |
tggtagctccatagaa |
15250372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 508 - 597
Target Start/End: Complemental strand, 14803248 - 14803151
Alignment:
| Q |
508 |
ctatactcgtaattgagatatga-tc--tca-gac-tttaaagac-aaaaca-gaggcatgagatagcactacaac-aaattgagatctagtaacggt |
597 |
Q |
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||||||||||||||||||||||| || ||| ||| ||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14803248 |
ctatactcgtaattgagatatgaatccatcaagacatttaaagaccaaaacaagaggcatgagatagcactacaacaaaattgagatctagtaacggt |
14803151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 508 - 597
Target Start/End: Complemental strand, 15250242 - 15250145
Alignment:
| Q |
508 |
ctatactcgtaattgagatatga-tc--tca-gac-tttaaagac-aaaaca-gaggcatgagatagcactacaac-aaattgagatctagtaacggt |
597 |
Q |
| |
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||||||||||||||||||||||| || ||| ||| ||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
15250242 |
ctatactcgtaattgagatatgaatccatcaagacatttaaagaccaaaacaagaggcatgagatagcactacaacaaaattgagatctagtaacggt |
15250145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 2e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 49 - 284
Target Start/End: Original strand, 17534788 - 17535025
Alignment:
| Q |
49 |
cctgaatctaactataggaagtttagtaacttttgccataagggatttgtccaatgcatagaaatctgcaaac--atacatgaatgcaatttttgatacg |
146 |
Q |
| |
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|||||||||||| ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||| ||||| ||||| ||||||||| |||||| || |
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| T |
17534788 |
cctgaatctaaccataggaagtttagtaactttttccataagagatttgtccaacgcatagaaatcttcaaacatatacacgaatgcaatatttgatgcg |
17534887 |
T |
|
| Q |
147 |
aatctacaatgtagatattttaaatttaaatgaatgtcataaacttggtataaaaattgtcttcgtcaaagatattaaagtattcttaaattgcttatct |
246 |
Q |
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| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||| || |
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| T |
17534888 |
attctacaatgtagata-tttaaatttaaatgaatgtcataaacttggtataaaaatt-tcttcttcaaagatattaaaatattcttaaattgctggcct |
17534985 |
T |
|
| Q |
247 |
c-atattctacattgcaag-cttttctatttctccaattt |
284 |
Q |
| |
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| ||| | ||||||||||| |||| ||||||||||||||| |
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| T |
17534986 |
caataatatacattgcaagcctttactatttctccaattt |
17535025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 553 - 597
Target Start/End: Original strand, 17535335 - 17535380
Alignment:
| Q |
553 |
agaggcatgagatagcactacaac-aaattgagatctagtaacggt |
597 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
17535335 |
agaggcatgagatagcactacaacaaaattgagatctagtaacggt |
17535380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 131
Target Start/End: Complemental strand, 35439120 - 35439025
Alignment:
| Q |
36 |
tatacttttacatcctgaatctaactataggaagtttagtaacttttgccataagggatttgtccaatgcatagaaatctgcaaacatacatgaat |
131 |
Q |
| |
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||||||||||| |||||||| ||| | ||||| || |||||||||||||| | | |||||||||| | || || ||||| |||||||||||||| |
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| T |
35439120 |
tatacttttactacctgaatccaaccaaaggaaattcagtaacttttgccaaaggagatttgtccagtacacaggaatcttaaaacatacatgaat |
35439025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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