View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5261-Insertion-3 (Length: 420)
Name: NF5261-Insertion-3
Description: NF5261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5261-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 286
Target Start/End: Original strand, 9322028 - 9322315
Alignment:
| Q |
8 |
caccatccactaatcattctgctaccgctaccaagaaatagagtgagcgttgtttccttcatcaaatgtgtaagttgtgtgtgttaaacatcatgcttaa |
107 |
Q |
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| T |
9322028 |
caccatccactaatcattctgctactgctaccaagaaatagagtgagcgttgtttccttcatcaaatgtgtaagttgtgtgtgttaaacatcatgcttaa |
9322127 |
T |
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| Q |
108 |
ggaagttgatgtgaagtctttactattatgcgttggttatttttattttagtaactgctcttcac-ttttattactccattacttaaggtag-tattgga |
205 |
Q |
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| T |
9322128 |
ggaagttgatgtcaagtctttactattatgcgttggttatttttattttagtaactgctcttcactttttattactccattacttatggtagttattgga |
9322227 |
T |
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| Q |
206 |
attattttt--ctttattg-aaattctagctg-aattattggtagc-ca-aacttcat-aaaaatcacatgaattttgtcacgaataa |
286 |
Q |
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| T |
9322228 |
attattttttcttttattgaaaattctagctgtaattattggtagcacacaacttcataaaaaatcacatgaattttgtcacgaataa |
9322315 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 171
Target Start/End: Original strand, 11634231 - 11634316
Alignment:
| Q |
87 |
tgtgttaaacatcatgcttaaggaagttgatgtgaagtctttac-tattatgcgttggttatttttattttagtaactgctcttca |
171 |
Q |
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| T |
11634231 |
tgtgttaaatatcatgcttaggactgctgatgtggagtcattatgtattatgtgttggttatttttattttagtaactgctgttca |
11634316 |
T |
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