View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5261-Insertion-4 (Length: 194)
Name: NF5261-Insertion-4
Description: NF5261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5261-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 64; Significance: 3e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 45248823 - 45248752
Alignment:
| Q |
13 |
aaccaagattttctcaacaacaaaagaagtaaccattcttcatacatcccaactcaactcaaacaaacaaca |
84 |
Q |
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| T |
45248823 |
aaccaagattttctcaacaacaaaagaagtaaccattcttcaaacaacccaactcaactcaaacaaacaaca |
45248752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 81 - 168
Target Start/End: Complemental strand, 45248729 - 45248639
Alignment:
| Q |
81 |
aacaggttagaatttctcatccttcatattatctgttttattattataaagattttataatt--aacagtttaaatatg-atgcatgaatg |
168 |
Q |
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| T |
45248729 |
aacaggttagaatttctcatccttcatattatctgttttattattataaaggttttataatttatacagttcaaatatgaatgcatgaatg |
45248639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 44863757 - 44863815
Alignment:
| Q |
81 |
aacaggttagaatttctcatccttcatattat-ctgttttattattataaagattttat |
138 |
Q |
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|||||||| |||||||||||||||||||| || ||||||||| ||||||||| |||||| |
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| T |
44863757 |
aacaggtttgaatttctcatccttcatatgatcctgttttatcattataaaggttttat |
44863815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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