View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5261-Insertion-6 (Length: 123)
Name: NF5261-Insertion-6
Description: NF5261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5261-Insertion-6 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 112; Significance: 4e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 4e-57
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 699978 - 699863
Alignment:
| Q |
8 |
cagcacacggttgtccatccaaaggcgaaaaaattgtatacctaacatctttaacaaccttccccaatgacttcaatttcctcatttgccacctaacaaa |
107 |
Q |
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| T |
699978 |
cagcacacggttgtccatccaaaggcgaaaaaattgtatacctaacatctttaacaaccttccccaatgacttcaatttcctcatttgccacctaacgaa |
699879 |
T |
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| Q |
108 |
agaatcaaaataaggg |
123 |
Q |
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| T |
699878 |
agaatcaaaataaggg |
699863 |
T |
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Target: chr3 (Bit Score: 61; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 23262147 - 23262259
Alignment:
| Q |
10 |
gcacacggttgtccatccaaaggcgaaaaaattgtatacctaacatctttaacaaccttccccaatgacttcaatttcctcatttgccacctaacaaaag |
109 |
Q |
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||||| || ||||||||||| |||||||||| ||||||||||||||| ||||||||||| || | | |||||| |||||||| |||||||||||||||| |
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| T |
23262147 |
gcacaaggctgtccatccaatggcgaaaaaactgtatacctaacatccttaacaaccttaccagacgccttcaacttcctcatatgccacctaacaaaag |
23262246 |
T |
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| Q |
110 |
aatcaaaataagg |
122 |
Q |
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|||||||||||| |
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| T |
23262247 |
catcaaaataagg |
23262259 |
T |
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