View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5261_high_15 (Length: 274)
Name: NF5261_high_15
Description: NF5261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5261_high_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 9 - 274
Target Start/End: Complemental strand, 546294 - 546029
Alignment:
| Q |
9 |
agcagagataaatacccttgaggtgatcatgttttggtagatgcagtcctatggggaagnnnnnnnngggaaaaccattctcaccaatataaaggagaat |
108 |
Q |
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| T |
546294 |
agcagagataaatacccttgaggtgatcatgttttggtagatgcagtcctatggggaagaaaaaaaagggaaaaccattctcaccaatataaaggagaat |
546195 |
T |
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| Q |
109 |
tctggagtgtgttttgtgaggggagtatgctgagacattttatgtcaaaaggcacgagatatagtgattgtgttgagtatgcttaaaattagaaaacaga |
208 |
Q |
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| T |
546194 |
tctggagtgtgttttgtgaggggagtatgctgagacattttatgtcaaaaggcacgagatatagtgattgtgttgagtatgcttaaaattagaaaacaga |
546095 |
T |
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| Q |
209 |
ggagtataatggaaaatgccaatgcttgaaattctgttctatatcgaataatattgtgatgcaagt |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
546094 |
ggagtataatggaaaatgccaatgcttgaaattctgttctatatcgaataatattgtgatgcaagt |
546029 |
T |
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