View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5261_high_16 (Length: 255)

Name: NF5261_high_16
Description: NF5261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5261_high_16
NF5261_high_16
[»] chr7 (4 HSPs)
chr7 (3-240)||(42029796-42030033)
chr7 (77-150)||(10325121-10325194)
chr7 (84-124)||(717501-717541)
chr7 (70-122)||(40901853-40901905)
[»] chr1 (3 HSPs)
chr1 (70-172)||(51080720-51080822)
chr1 (70-122)||(2536530-2536582)
chr1 (70-122)||(11351645-11351697)
[»] chr2 (2 HSPs)
chr2 (70-172)||(40287065-40287167)
chr2 (70-122)||(29894369-29894421)
[»] chr3 (3 HSPs)
chr3 (77-133)||(38998907-38998963)
chr3 (77-124)||(27265807-27265854)
chr3 (70-122)||(36684916-36684968)
[»] chr6 (3 HSPs)
chr6 (77-124)||(13757556-13757603)
chr6 (77-124)||(19047096-19047143)
chr6 (70-122)||(942704-942756)
[»] chr5 (2 HSPs)
chr5 (70-124)||(14856970-14857024)
chr5 (88-172)||(32163040-32163124)
[»] chr8 (2 HSPs)
chr8 (80-125)||(14541224-14541269)
chr8 (81-173)||(11911423-11911515)
[»] chr4 (2 HSPs)
chr4 (81-124)||(2087389-2087432)
chr4 (70-122)||(1394136-1394188)
[»] scaffold0041 (1 HSPs)
scaffold0041 (70-122)||(48113-48165)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 3 - 240
Target Start/End: Original strand, 42029796 - 42030033
Alignment:
Q  3 agcattatatgggaccaaatacatgaaggaacatcatcataaaaaattatatgggactagctgtatcaattcacgagcgaccccattagtttgcctcata 102  Q
    ||||||||||||||||||||||||||||| | |||||||| ||| ||||||| |||||| | |||||||||||||||||||||||||| |||||||||||    
T  42029796 agcattatatgggaccaaatacatgaaggtatatcatcatcaaacattatataggactaaccgtatcaattcacgagcgaccccattaatttgcctcata 42029895  T
Q  103 ttaaactcaacatgagagtttttgaaactattaaggaacatttgtctatatgcagaaataatacaaccaaatgagtctacaacattcttaaagtcgagag 202  Q
    ||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42029896 ttaaattcaacatgagagtttttgaaactattatggaacatctgtctatatgcagaaataatacaaccaaatgagtctacaacattcttaaagtcgagag 42029995  T
Q  203 caaaatccaaattataaagttgaaggtctaatgttcat 240  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42029996 caaaatccaaattataaagttgaaggtctaatgttcat 42030033  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 10325121 - 10325194
Alignment:
Q  77 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtcta 150  Q
    |||||||| |||| ||||||||| |||||||||| ||||||||||| || |||| |||||| |||| |||||||    
T  10325121 gagcgacctcattcgtttgcctcctattaaactcgacatgagagttgtttaaacaattaagtaacaattgtcta 10325194  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 717541 - 717501
Alignment:
Q  84 cccattagtttgcctcatattaaactcaacatgagagtttt 124  Q
    |||||||| ||| ||| ||||||||||||||||||||||||    
T  717541 cccattagcttgtctcctattaaactcaacatgagagtttt 717501  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 40901853 - 40901905
Alignment:
Q  70 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 122  Q
    |||||| ||||||||  ||||||||||||| |||| ||||| |||||||||||    
T  40901853 aattcatgagcgaccatattagtttgcctcctattcaactcgacatgagagtt 40901905  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 70 - 172
Target Start/End: Original strand, 51080720 - 51080822
Alignment:
Q  70 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtctatatgcagaaataatacaac 169  Q
    |||||| ||||||||||||||| ||||||| |||||||||| |||||||||||||  |||||||   | ||||  |||||| |||||| |||||||||||    
T  51080720 aattcatgagcgaccccattagattgcctcctattaaactcgacatgagagttttgaaaactatcctgaaacaactgtctacatgcagtaataatacaac 51080819  T
Q  170 caa 172  Q
    |||    
T  51080820 caa 51080822  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 2536530 - 2536582
Alignment:
Q  70 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 122  Q
    |||||| ||||||||||||| | ||||||| |||| ||||| |||||||||||    
T  2536530 aattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 2536582  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 11351645 - 11351697
Alignment:
Q  70 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 122  Q
    |||||| ||||||||||||| | ||||||| |||| ||||| |||||||||||    
T  11351645 aattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 11351697  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 172
Target Start/End: Original strand, 40287065 - 40287167
Alignment:
Q  70 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtctatatgcagaaataatacaac 169  Q
    |||||| ||| ||||||||||| |||||||||||||||||  |||||||||||||  |||||||   | ||||  |||||| |||||| |||||||||||    
T  40287065 aattcatgagtgaccccattagcttgcctcatattaaacttgacatgagagttttgaaaactatcctgaaacaactgtctacatgcagtaataatacaac 40287164  T
Q  170 caa 172  Q
    |||    
T  40287165 caa 40287167  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 29894369 - 29894421
Alignment:
Q  70 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 122  Q
    |||||| ||||||||||||| | ||||||| |||| ||||| |||||||||||    
T  29894369 aattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 29894421  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 38998963 - 38998907
Alignment:
Q  77 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactat 133  Q
    ||||||||||||||| ||||||| |||||||||| |||||||||||||  |||||||    
T  38998963 gagcgaccccattagcttgcctcctattaaactcgacatgagagttttgaaaactat 38998907  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 27265854 - 27265807
Alignment:
Q  77 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttt 124  Q
    |||||||| |||||||||| ||| ||||||||||||||||||||||||    
T  27265854 gagcgacctcattagtttgtctcttattaaactcaacatgagagtttt 27265807  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 36684968 - 36684916
Alignment:
Q  70 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 122  Q
    |||||| ||||||||||||||| ||||||| |||| ||||| |||||||||||    
T  36684968 aattcatgagcgaccccattagcttgcctcctattgaactcgacatgagagtt 36684916  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 13757556 - 13757603
Alignment:
Q  77 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttt 124  Q
    |||||||| ||||||||||| || ||||||||||||||||||||||||    
T  13757556 gagcgacctcattagtttgcttcttattaaactcaacatgagagtttt 13757603  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 19047143 - 19047096
Alignment:
Q  77 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttt 124  Q
    |||||||| |||||| ||||||| |||||||||| |||||||||||||    
T  19047143 gagcgaccacattagcttgcctcctattaaactcgacatgagagtttt 19047096  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 942756 - 942704
Alignment:
Q  70 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 122  Q
    |||||||||||||||||||| | ||||||| |||| ||||| |||| ||||||    
T  942756 aattcacgagcgaccccattggcttgcctcctattgaactcgacattagagtt 942704  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 14856970 - 14857024
Alignment:
Q  70 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtttt 124  Q
    |||||| |||||| | |||| |||||||||||||||||||| |||||||||||||    
T  14856970 aattcatgagcgatcacatttgtttgcctcatattaaactcgacatgagagtttt 14857024  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 172
Target Start/End: Complemental strand, 32163124 - 32163040
Alignment:
Q  88 ttagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtctatatgcagaaataatacaaccaa 172  Q
    |||||||||||| |||||||||| | |||||||||||  |||||||   | ||||  |||||| | |||| ||||||||||||||    
T  32163124 ttagtttgcctcctattaaactcgatatgagagttttgaaaactatcctgaaacaactgtctacaggcagtaataatacaaccaa 32163040  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 14541269 - 14541224
Alignment:
Q  80 cgaccccattagtttgcctcatattaaactcaacatgagagttttt 125  Q
    ||||| ||||||||||||||||||||||||||| | ||||||||||    
T  14541269 cgaccacattagtttgcctcatattaaactcaatacgagagttttt 14541224  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 173
Target Start/End: Original strand, 11911423 - 11911515
Alignment:
Q  81 gaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtctatatgcagaaataatacaaccaaa 173  Q
    ||||||||| |||| |||| |||| ||||| |||||||||||||  ||||||||||  |||  ||||||| || || | || |||||||||||    
T  11911423 gaccccattcgtttacctcctattgaactcgacatgagagttttgaaaactattaattaactattgtctacatacaaatatgatacaaccaaa 11911515  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 124
Target Start/End: Original strand, 2087389 - 2087432
Alignment:
Q  81 gaccccattagtttgcctcatattaaactcaacatgagagtttt 124  Q
    ||||||||||||||||||| ||||||| | ||||||||||||||    
T  2087389 gaccccattagtttgcctcgtattaaatttaacatgagagtttt 2087432  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 1394188 - 1394136
Alignment:
Q  70 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 122  Q
    |||||| || |||||||||||| ||||||| |||| ||||| |||||||||||    
T  1394188 aattcatgaacgaccccattagcttgcctcctattgaactcgacatgagagtt 1394136  T

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Target: scaffold0041 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 48165 - 48113
Alignment:
Q  70 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 122  Q
    |||||| ||||||||  ||||||||||||| |||| ||||| |||||||||||    
T  48165 aattcatgagcgaccatattagtttgcctcctattcaactcgacatgagagtt 48113  T

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