View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5261_high_20 (Length: 239)
Name: NF5261_high_20
Description: NF5261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5261_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 36360458 - 36360678
Alignment:
| Q |
1 |
tgtgtgtcatccgtatgaccatcccctttagctccataatctctaacattaacaattttaagtgaacgtgaagagacaccaaattggtctaagcacaaaa |
100 |
Q |
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| T |
36360458 |
tgtgtgtcatccgtatgaccatcccctttagctccataatctctaacattaacaattttaagtgaacgtgaagagacaccaaattggtctaagcacaaaa |
36360557 |
T |
|
| Q |
101 |
catcatttgtgttttgctctatcatgttcttgaataataatgtatcactatcatcgtaggaaggtgaatcatcaacgtatgtagtaataagtgggtcctg |
200 |
Q |
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| T |
36360558 |
catcatttgtgttttgctctatcatgttcttgaataataatgtatcactatcatcgtaggaaggtgaatcatcaacgtatgtagtaataagtgggtcctc |
36360657 |
T |
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| Q |
201 |
ttgcaagttgctattgcaagc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
36360658 |
ttgcaagttgctattgcaagc |
36360678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 36349125 - 36349196
Alignment:
| Q |
1 |
tgtgtgtcatccgtatgaccatcccctttagctccataatctctaacattaacaattttaagtgaacgtgaa |
72 |
Q |
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||||||||||| || | |||||||||||||||||||||||| || ||||||| ||||| |||||||| |||| |
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| T |
36349125 |
tgtgtgtcatcagttttaccatcccctttagctccataatcactgacattaaaaatttgaagtgaacttgaa |
36349196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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