View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5261_high_5 (Length: 440)
Name: NF5261_high_5
Description: NF5261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5261_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 257 - 422
Target Start/End: Original strand, 11584342 - 11584507
Alignment:
| Q |
257 |
caccactaccagtttgtagtgtaataaacaatagtctaattgaaattttgatggttctaaccccaagatttatcacaacaaaaaacattgtttaaccaac |
356 |
Q |
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| T |
11584342 |
caccactaccagtttgtagtgtaataaacaagagtctaattgaaattttgatggttctaaccccaagatttatcacaacaaaaaacattgtttaaccaac |
11584441 |
T |
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| Q |
357 |
aagcattttattttagggttatgacccacttttcaaagctaccaccatattttctcatatactcta |
422 |
Q |
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| T |
11584442 |
aagcattttattttagggttgtgacccacttttcaaagctaccaccatattttctcatatactcta |
11584507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 7 - 197
Target Start/End: Original strand, 11584110 - 11584281
Alignment:
| Q |
7 |
tcgaagaatatcattctgagcaaccatagtctcggattgcataattctatgatttggtgctttgtgatcaaaattgttttgagagggagttaagttctag |
106 |
Q |
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| T |
11584110 |
tcgaagaatatcattctaaacaaccatagtctcggattgcataattctaag------tgctttgtgatcaaaattgttttgagagggatttaagttctag |
11584203 |
T |
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| Q |
107 |
tgagtatagatatcactttttaaaataacaaagggcaaaacgcacatggatttattgtctgcaatgcatagaagcttataataaagtatgc |
197 |
Q |
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| T |
11584204 |
tgagtatagatatcactttttaaaataacaaa-------------atggatttattgtctgcaatgcatagaagcttataataaagtatgc |
11584281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 363 - 423
Target Start/End: Complemental strand, 29839390 - 29839330
Alignment:
| Q |
363 |
tttattttagggttatgacccacttttcaaagctaccaccatattttctcatatactctat |
423 |
Q |
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| T |
29839390 |
tttattttagggttcggacccactcatcaaagctaccaccatattttcttatatactctat |
29839330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 363 - 423
Target Start/End: Complemental strand, 29857473 - 29857413
Alignment:
| Q |
363 |
tttattttagggttatgacccacttttcaaagctaccaccatattttctcatatactctat |
423 |
Q |
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|||||||||| ||| |||||||| ||||||||||||||||||||||| ||||| ||||| |
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| T |
29857473 |
tttattttagtgttcggacccactcatcaaagctaccaccatattttcttatatattctat |
29857413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 423
Target Start/End: Original strand, 29857007 - 29857041
Alignment:
| Q |
389 |
tcaaagctaccaccatattttctcatatactctat |
423 |
Q |
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| T |
29857007 |
tcaaagctaccaccatattttcttatatactctat |
29857041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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