View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5261_low_1 (Length: 640)
Name: NF5261_low_1
Description: NF5261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5261_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 527; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 8 - 621
Target Start/End: Original strand, 11034077 - 11034683
Alignment:
| Q |
8 |
cgaagaatattgcccaatattacttactattgacaagttttttagaagaaaagacatcatactaacaacagaacaagnnnnnnnnatagtttttgtactg |
107 |
Q |
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|||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11034077 |
cgaaaaatattgcccaatattact----atttacaagttttttagaagaaaagacatcatactaacaacagaacaagttttttttatagtttttgtactg |
11034172 |
T |
|
| Q |
108 |
aaaatttgttttctaaactttattttaagtcttatgtcttgcttacctatgcgactcgataaacgtgcaactatccaagccacattattccagtaagctg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11034173 |
aaaatttgttttctaaactttattttaagtcttatgtcttgcttacctgtgcgactcgataaacatgcaactatccaagccacattattccagtaagctg |
11034272 |
T |
|
| Q |
208 |
caaggacatacacaaagcatagtaacagattaagtgttaattagtagcactcactctaacaaatgggtgtggaagatcgatgtaattgtaaataaaagaa |
307 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11034273 |
caaggacatacacaaagcatagtaacagattgagtgttaattagtagcactcactctaacaaatgggtgtggaagatcgatgtaattgtaaataaaagaa |
11034372 |
T |
|
| Q |
308 |
aattaagcaaccaacttgaaaaaatagagtatctaaagcgcagaattgcatatataccaaccataattacagtgagcctggttattttgatcgagctccg |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11034373 |
aattaagcaaccaacttgaaaaaatagagtatctaaagagcagaattgcatatataccaaccataattacagtgagcctggttattttgatcgagctccg |
11034472 |
T |
|
| Q |
408 |
catacgcatatgaaacatctaatttacaaaaactgttgagccaagaaagttcaaatccataaaacatctcacgacggatatccgcgcaagaaatgctgtt |
507 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11034473 |
catacgcatacgaaacatctaatttacaaaaactgttgagccaagaaagttcaaatccataaaacatctcacgacggatatccgcgcaagaaa---tgtt |
11034569 |
T |
|
| Q |
508 |
gttgttgttgtgatcagcaccatcatcttcaacatccaaagaagtgagatacataaactgtatacgacacccatctcccagcccgaattccgacagagat |
607 |
Q |
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| T |
11034570 |
gttgttgttgtgatcagcaccatcatcttcaacatccaaagaagtgagatacataaactgtatacgacacccatctcccagcccgaattccgacagagat |
11034669 |
T |
|
| Q |
608 |
ttgccatagctacc |
621 |
Q |
| |
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|| ||||||||||| |
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| T |
11034670 |
ttaccatagctacc |
11034683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 165 - 617
Target Start/End: Original strand, 11008834 - 11009266
Alignment:
| Q |
165 |
gataaacgtgcaactatccaagccacattattccagtaagctgcaaggacatacacaaagcatagtaacagattaagtgttaattagtagcactcactct |
264 |
Q |
| |
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|||||||||||||||||||||||| | |||||||||||| ||||||| || ||| |||||||||| ||| ||| ||||||| ||||||||||||||||| |
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| T |
11008834 |
gataaacgtgcaactatccaagccgcgttattccagtaatctgcaagagcaaacataaagcatagtgacatattgagtgttatttagtagcactcactct |
11008933 |
T |
|
| Q |
265 |
aacaaatgggtgtggaagatcgatgtaattgtaaataaaag-aaaattaagcaaccaacttg-aaaaaatagagtatctaaagcgcagaattgc--atat |
360 |
Q |
| |
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| T |
11008934 |
aacaaatggatgtggaagatccacgcgattgtaaataatagaaaaattaagcatcgaaattgaaaaaaatagagtatataaatcgcacaactgcatatat |
11009033 |
T |
|
| Q |
361 |
ataccaaccataattacagtgagcctggttattttgatcgagctccgcatacgcatatgaaacatctaatttacaaaaactgttgagccaagaaagttca |
460 |
Q |
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|||||||||||| |||||||||| |||||||| |||||||||| | |||||| | ||| |||||| |||||||||||||||||||||| |
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| T |
11009034 |
ataccaaccatatttacagtgaggctggttatattgatcgagcactgcatac------cgaccat---gtttacaccgactgttgagccaagaaagttca |
11009124 |
T |
|
| Q |
461 |
aatccataaaacatctcacgacggatatccgcgcaagaaatgctgttgttgttgttgtgatcagcaccatcatcttcaacatccaaagaagtgagataca |
560 |
Q |
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| T |
11009125 |
aatccataatacatcctacgacgaatgtctgtacaagaaatgttgttgatgttg------------ccatcatcttcaacatcc---caagtgagataca |
11009209 |
T |
|
| Q |
561 |
taaactgtatacgacacccatctcccagcccgaattccgacagagatttgccatagc |
617 |
Q |
| |
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|||||| |||| ||||||| ||||||| ||| |||||| |||||||||| ||||||| |
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| T |
11009210 |
taaactctatatgacacccgtctcccaacccaaattccaacagagatttaccatagc |
11009266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 430 - 519
Target Start/End: Original strand, 10921628 - 10921717
Alignment:
| Q |
430 |
tttacaaaaactgttgagccaagaaagttcaaatccataaaacatctcacgacggatatccgcgcaagaaatgctgttgttgttgttgtg |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | ||| |||||| ||||||| |||||||| |
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| T |
10921628 |
tttacaaaaactgttgagccaagaaagttcaaatccataaaagatctcacgacggatgtctgtgcatgaaatgttgttgtttttgttgtg |
10921717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 430 - 510
Target Start/End: Complemental strand, 11003424 - 11003344
Alignment:
| Q |
430 |
tttacaaaaactgttgagccaagaaagttcaaatccataaaacatctcacgacggatatccgcgcaagaaatgctgttgtt |
510 |
Q |
| |
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|||||||| ||| |||||||| |||||||||||||||||||||||| |||| | ||||||| ||||||||| ||||||| |
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| T |
11003424 |
tttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgatgaatatccgtacaagaaatgttgttgtt |
11003344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 430 - 508
Target Start/End: Complemental strand, 11000444 - 11000366
Alignment:
| Q |
430 |
tttacaaaaactgttgagccaagaaagttcaaatccataaaacatctcacgacggatatccgcgcaagaaatgctgttg |
508 |
Q |
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|||||||| || |||||||| |||||||||||||||||||||||| |||||| ||||||| |||| ||||| ||||| |
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| T |
11000444 |
tttacaaaggctattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtgcaaaaaatgttgttg |
11000366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 443 - 515
Target Start/End: Original strand, 10905232 - 10905304
Alignment:
| Q |
443 |
ttgagccaagaaagttcaaatccataaaacatctcacgacggatatccgcgcaagaaatgctgttgttgttgt |
515 |
Q |
| |
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||||||||||||| ||||||||||||| ||||| |||||||| ||| |||||||||| | ||||||||| |
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| T |
10905232 |
ttgagccaagaaaattcaaatccataatacatcatacgacggaagtccttgcaagaaatgttactgttgttgt |
10905304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 434 - 502
Target Start/End: Original strand, 10975134 - 10975202
Alignment:
| Q |
434 |
caaaaactgttgagccaagaaagttcaaatccataaaacatctcacgacggatatccgcgcaagaaatg |
502 |
Q |
| |
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|||| ||| ||||||||||||| ||||||||||||| ||||| |||||||| ||| |||||||||| |
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| T |
10975134 |
caaatactattgagccaagaaaattcaaatccataatacatcatacgacggaagtccttgcaagaaatg |
10975202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 430 - 514
Target Start/End: Original strand, 10987989 - 10988073
Alignment:
| Q |
430 |
tttacaaaaactgttgagccaagaaagttcaaatccataaaacatctcacgacggatatccgcgcaagaaatgctgttgttgttg |
514 |
Q |
| |
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|||||||| ||| ||||||||||| | ||||||||||||| ||||| ||| ||| |||| |||||||||| | ||||||||| |
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| T |
10987989 |
tttacaaagactattgagccaagagacttcaaatccataagacatcatacggttgatgtccgtgcaagaaatgttattgttgttg |
10988073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 430 - 514
Target Start/End: Original strand, 11019157 - 11019241
Alignment:
| Q |
430 |
tttacaaaaactgttgagccaagaaagttcaaatccataaaacatctcacgacggatatccgcgcaagaaatgctgttgttgttg |
514 |
Q |
| |
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|||||||| ||| ||||||||||| | ||||||||||||| ||||| ||| ||| |||| |||||||||| | ||||||||| |
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| T |
11019157 |
tttacaaagactattgagccaagagacttcaaatccataagacatcatacggttgatgtccgtgcaagaaatgttattgttgttg |
11019241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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