View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5261_low_2 (Length: 619)
Name: NF5261_low_2
Description: NF5261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5261_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 266 - 604
Target Start/End: Original strand, 2252052 - 2252390
Alignment:
| Q |
266 |
tttttctattattaaattacgaggaggttcgaagaattatggacaagggcatttgatttttaatgagagaggagggcagatagaaaaagttagttgattt |
365 |
Q |
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| T |
2252052 |
tttttctattattaaattacgaggaggttcgaagaattatggaccagggcatttgatttttaatgagagaggagggcagatagaaaaagttagttgattt |
2252151 |
T |
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| Q |
366 |
accaaccaaccaccaatctatctagaactagaccagaagaagggggttagatttaaaaaacgtggacccaccaattgaaaaagagatagaccgtactaca |
465 |
Q |
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| T |
2252152 |
accaactaaccaccaatctatctagaactagactagaagaagggggttagatttaaaaaacgtggacccaccaattgaaaaagagatagaccgtactaca |
2252251 |
T |
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| Q |
466 |
ctacttgacatagagcacgacgacaccgtatggttgatcccgcgtctgtatcactgctaacaaccgaaacggttagtacaatcatttatttactactaca |
565 |
Q |
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| T |
2252252 |
ctacttgacatagagcacgacgacaccgtatggttgatcccgcgtctgtatcactgctaacaaccgaaacggttagtacaatcatttatttactactaca |
2252351 |
T |
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| Q |
566 |
cctctctttctacttctacgtttgtttcttctacactct |
604 |
Q |
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| T |
2252352 |
cctctctttctacttctacgtttgtttcttctactctct |
2252390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 10 - 151
Target Start/End: Original strand, 2251775 - 2251916
Alignment:
| Q |
10 |
acatcatcatcgacacttcatcaacaaaacacactatcataaagactttggacaaaggagtcaagccatctaataatcattaactttgatattattatta |
109 |
Q |
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| T |
2251775 |
acatcatcattgacacttcatcaacaaaacacactatcataaagactttggacaaaggagtcaaaccatctaataatcattaactttgatattattatta |
2251874 |
T |
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| Q |
110 |
atggatgctaacaaatgccataagagcattatttatgaagac |
151 |
Q |
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| T |
2251875 |
atggatgctaacaaatacgataagagcattatttaagaagac |
2251916 |
T |
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