View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5261_low_20 (Length: 248)
Name: NF5261_low_20
Description: NF5261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5261_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 36360420 - 36360175
Alignment:
| Q |
1 |
aatatatacgaactattgataaatttcatatttaatattttgtatgcccatgcgatactaatttggttttctattaacatcaaatgattttctnnnnnnn |
100 |
Q |
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| T |
36360420 |
aatatatacgaactattgataaatttcatatttaatattttgtatgcccatacgatactaatttggttttctattaacatcaa-tgattttctaaaaaaa |
36360322 |
T |
|
| Q |
101 |
taacttaaattttcctataattggacatataataatattcaggcattcaagaaggcttgggaagtagtatgttcgtcagggcaatcagttttagtggcac |
200 |
Q |
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| T |
36360321 |
taacttaaattttcctataattggacatataataatattcaggcattcaagaaggcttgggaagtagtatgttcgtcagggcaatcagttttagtggcac |
36360222 |
T |
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| Q |
201 |
ctcaagattataattatctactcaaaccaatcagattctctgctcct |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36360221 |
ctcaagattataattatctactcaaaccaatcagattctctggtcct |
36360175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 133 - 247
Target Start/End: Complemental strand, 36349031 - 36348911
Alignment:
| Q |
133 |
taatattcaggcattcaagaaggcttgggaagtagtatgttcgtcagg------gcaatcagttttagtggcacctcaagattataattatctactcaaa |
226 |
Q |
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| T |
36349031 |
taatattcaggcattcgagaaggcttgggaagcagtatgttcttcaggaggaggggaagcagtttttgttgcacctcaagataatatttatctactcaaa |
36348932 |
T |
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| Q |
227 |
ccaatcagattctctgctcct |
247 |
Q |
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| T |
36348931 |
ccaatcagattctctggtcct |
36348911 |
T |
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