View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5261_low_23 (Length: 223)
Name: NF5261_low_23
Description: NF5261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5261_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 1330202 - 1329991
Alignment:
| Q |
1 |
ttctccatctctgacatttgaacgtaagacggtggtgcgatagccaatgaagctgcaaatggatctacatatcctgaagtagaattaactccagttcctg |
100 |
Q |
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| T |
1330202 |
ttctccatctctgacatttgaacgtaagacggcggtgcgatagccaatgaagctgcaaatggatctacatatcctgaagtagaattaactccagttcctg |
1330103 |
T |
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| Q |
101 |
atgttggtggtgctggcaatgctagcattgctggccttccggctgaaccaagtgctacactgctagcacttccactgcaaccatatcccactccttgcat |
200 |
Q |
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| T |
1330102 |
atgttggtggtgctggcaatgctagcattgctggccttccggctgaaccaagtgctacactgctagcacttccactgccaccatatcccactccttgcat |
1330003 |
T |
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| Q |
201 |
ggctgcattcat |
212 |
Q |
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|||||||||||| |
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| T |
1330002 |
ggctgcattcat |
1329991 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 1925753 - 1925689
Alignment:
| Q |
2 |
tctccatctctgacatttgaacgtaagacggtggtgcgatagccaatgaagctgcaaatggatct |
66 |
Q |
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|||||||||||||||||||||| |||| |||||||| | | || ||| ||||||||||||||| |
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| T |
1925753 |
tctccatctctgacatttgaacataagctggtggtgctacaagcattgatgctgcaaatggatct |
1925689 |
T |
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