View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5261_low_3 (Length: 618)
Name: NF5261_low_3
Description: NF5261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5261_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 17 - 606
Target Start/End: Original strand, 6457844 - 6458433
Alignment:
| Q |
17 |
atgagcaagcatcaacaactctccccaccctttcttctcccatttatattcgacgctgaatggatttgtgaatgctgcatcaccagaagtagggtaacaa |
116 |
Q |
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| T |
6457844 |
atgagcaagcatcaacaactctccccaccctttcttctcccatttatattcgacgctgaatggatttgtgaatgctgcatcaccagaagtagggtaacaa |
6457943 |
T |
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| Q |
117 |
gaactgaaccggttaaggattacctcgtacttgggatcagaatcaggtaatactgccatccttattatgccagaatagccttcagaggtaatctcagaaa |
216 |
Q |
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| T |
6457944 |
gaactgaaccggttaaggattacctcgtacttgggatcagaatcaggtaatactgccatccttattatgccagaatagccttcagaggtaatctcagaaa |
6458043 |
T |
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| Q |
217 |
ggctattactgaaacttaccggggacgatgtgtaaatgagccatgtttggccattgttgagctgcaaattgtgcttggtgagggaattattggatgagaa |
316 |
Q |
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| T |
6458044 |
ggctattactgaaacttaccggggacgatgtgtaaatgagccatgtttggccattgttgagctgcaaattgtgcttggtgagggaattattggatgagaa |
6458143 |
T |
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| Q |
317 |
tgaaaggatggaatgtatggtggtgatggaaagtggcgtacggttggttactgacgctgtcacaaaagggcttcctcttacgaggaagaaccgcaggtta |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6458144 |
tgaaaggatggaatgtatggtggtgatggaaagtggcgtacggttggttactgacactgtcacaaaagggcttcctcttacgaggaagaaccgcaggtta |
6458243 |
T |
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| Q |
417 |
gacaagggaatgtccaaagtgacaccgagatcactgaaggaagagatcacatgtttttcatgtgagtcttggtttgttttcatggaggtagaaatagtga |
516 |
Q |
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| T |
6458244 |
gacaagggaatgtccaaagtgacaccgagatcactgaaggaagagatcacatgtttttcatgtgagtcttggtttgttttcatggaggtagaaatagtga |
6458343 |
T |
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| Q |
517 |
tatcagggtcgaagacttgagctatgaaagaagcgttggaggtgcaagtagggtagcagagggagagggaggagtttgaggatttgatga |
606 |
Q |
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| T |
6458344 |
tatcagggtcgaagacttgagctatgaaagaagcgttggaggtgcaagtagggtagcagagggagagggagaagtttgaggatttgatga |
6458433 |
T |
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