View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5261_low_4 (Length: 578)
Name: NF5261_low_4
Description: NF5261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5261_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 1 - 562
Target Start/End: Complemental strand, 32643905 - 32643344
Alignment:
| Q |
1 |
agtgtgtgaattcgtgatgtggtacctcgtgttgcaatcataattttgcttttcaaaactatctgcaaaacatcattaaaaattcgagtgcatgtgttat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32643905 |
agtgtgtgaattcgtgatgtggtacctcgtgttgcaatcataattttgcttttcaaaactatctgcaaaacatcattaaaaattcgagtgcatgtgttat |
32643806 |
T |
|
| Q |
101 |
ttagaacattttttatgccggttattgccgtgtaccgtttcaagatgaacatctgaagagagatgtcctttttcacgagccttgtagtcaagggcaatcc |
200 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32643805 |
ttagaacattttttatgccggttattgccgtgtgccttttcaagatgaacatctgaagagagatgtcctttttcacgagccttgtggtcaagggcaatcc |
32643706 |
T |
|
| Q |
201 |
acccccaattgggatggcaggttcatcctttcccaaaatttgcaagcatgttacagcttcattcacaagagcattgataacagtgccttgtagaactgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32643705 |
acccccaattgggatggcaggttcatcctttcccaaaatttgcaagcaagttacagcttcattcacaagagcattgataacagtgccttgtagaagtgtt |
32643606 |
T |
|
| Q |
301 |
acttttgagacaaggttatggtacccaactttttcaagccaaagccagagagccatgactagaagagattgagtcacctcgtggtgaagtttgaagatca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32643605 |
acttttgagacaaggttatggtacccaactttttcaagccaaagccagagagccatgactagaagagattgagtcacctcgtggtgaagtttgaagatca |
32643506 |
T |
|
| Q |
401 |
aaaaacaaaatagctcacgatcaatttggtaaaaaatgttaagctcatcagtggtgataggagtctgtgtgacgaacaaagacctatccatgatgatgac |
500 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| |
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| T |
32643505 |
aaaaacaaaatagctcacgatcaatttggtaaaaaaggttaagctcatcagtggtgataggagtctgtgtgacaaacaaaggcttatccatgatgatgac |
32643406 |
T |
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| Q |
501 |
aggttaaagggacgttagaagaaagtgagatgtggcgagttgtggttttatattagtaaaat |
562 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32643405 |
aggttaaagggacgttagaagaaagtgagatgtggcgagttatggttttatattagtaaaat |
32643344 |
T |
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