View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5261_low_5 (Length: 475)
Name: NF5261_low_5
Description: NF5261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5261_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 18 - 461
Target Start/End: Original strand, 45440501 - 45440948
Alignment:
| Q |
18 |
gtaaccagtcaaaggatatctgcagattgacagaggaaatggtactagctatgaaaccccgcatcgtcaaaaaacattaaggtcaataaaacaagaaaat |
117 |
Q |
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| T |
45440501 |
gtaaccagtcaaaggatatctgcagattgacagaggaaatggtactagctatgaaaccccgcatcctcaaaaaacattaaggtcaataaaacaagaaaat |
45440600 |
T |
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| Q |
118 |
tttgaattgatacctgtagtccataacaaaattagattttcctaccctccctagctgcaggattgtctgcttcccattctcctaatcatagcaaacacaa |
217 |
Q |
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| T |
45440601 |
tttgaattgatacctgtagtccataacaaaattagattttcctaccctccctagctgcaggattgtctgcttcccattctcctaatcatagcaaacacaa |
45440700 |
T |
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| Q |
218 |
ataagctaagtagagaacataactaactgcgttattataacataaaaaacactcccggcttcaatgatgatacctctaaagtgagctgaaagtttttcac |
317 |
Q |
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| T |
45440701 |
atcagctaagtagacaacataactaactgcgttattataacataaaaaacactcccggcttcaatgatgatacctctaaagtgagctgaaagtttttcac |
45440800 |
T |
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| Q |
318 |
ggatctctggattccaagtcctggccttcctttatctctatagtcaagctcaaattgctttgtactcttgatgaaggaagacaataaaaatgaatgaaaa |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45440801 |
ggatctctggattccaagtcctggccttcctttatctctatagtcaagctcaaattgctttgtactcttgatgaaggaagacaataaaaattaatgaaaa |
45440900 |
T |
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| Q |
418 |
tcaatatccatggctagtt----ataaatgacaaagaaacttcccctc |
461 |
Q |
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| T |
45440901 |
tcaatatccatggctagctataaataaatgacaaagaaacttcccctc |
45440948 |
T |
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