View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5262-Insertion-1 (Length: 445)
Name: NF5262-Insertion-1
Description: NF5262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5262-Insertion-1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 7 - 441
Target Start/End: Original strand, 51388535 - 51388973
Alignment:
| Q |
7 |
agttattccctctccaccccttgagaatcctacattcaaacatatacaaagacaataaaacaataatgaaaatcaattagccttatggataacttgaact |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51388535 |
agttattccctctccaccccttgagaatcctacattcaaacatatacaaagacaataaaacaataatgaaaatcaattagccttatggataacttgaact |
51388634 |
T |
|
| Q |
107 |
cctagtgagcttagttattcctaatcccttacaattccttttgtctaaacttcttttagctatatccctcatagacaaagttaatgagagtttggggtta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51388635 |
cctagtgagcttagttattcctaatcccttacaattccttttgtctaaacttcttttagctatatccctcatagacaaagttaatgagagtttggggtta |
51388734 |
T |
|
| Q |
207 |
agtctgattgtagcattatattcctggctgaaatccatctgagacttcaaagcctcaaacaagtgtaataactttagtgcttctccctactttatcttta |
306 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51388735 |
agtctgattgtggcattatattcctggctgaaatccatctgagacttcaaagcctc-aacaagtgtaataactttagtgcttctccctactttatcttta |
51388833 |
T |
|
| Q |
307 |
acagcttcacaacaaagtccacacacccacttt-cacaataatcttcttcaacttcattcatat-aactttgctac-ttcttctttcatcccac-acatt |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
51388834 |
acagcttcacaacaaagtccacacacccactttccacaataatcttcttcaacttcattcatataaactttgctacattcttctttcatcccacaacatt |
51388933 |
T |
|
| Q |
403 |
ggcattcagcttcttct-actcttcaatgtcatcaaattt |
441 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
51388934 |
ggcattcagcttcttctaactcttcaatgtcatcaaattt |
51388973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 7 - 186
Target Start/End: Original strand, 51384407 - 51384595
Alignment:
| Q |
7 |
agttattccctctccaccccttgagaatcctacattcaaacatatacaaagacaataaaacaataatgaaaatcaattagcc---------ttatggata |
97 |
Q |
| |
|
|||||||||||||| |||| | | ||||| ||||||||||||| |||||||||| ||||||||||||||||||| | | ||||||||| |
|
|
| T |
51384407 |
agttattccctctctacccgtccaaaatccggcattcaaacatattcaaagacaatcaaacaataatgaaaatcaaacactcactagaaagttatggata |
51384506 |
T |
|
| Q |
98 |
acttgaactcctagtgagcttagttattcctaatcccttacaattccttttgtctaaacttcttttagctatatccctcatagacaaag |
186 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| || ||||||||| |||||| |
|
|
| T |
51384507 |
acttgtactcctagtgagcttagttattcccaatcccttacgattccttttgtctaaacttcttttagcaatttccctcataaacaaag |
51384595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University