View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5262-Insertion-2 (Length: 247)
Name: NF5262-Insertion-2
Description: NF5262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5262-Insertion-2 |
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| [»] scaffold0879 (1 HSPs) |
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Alignment Details
Target: scaffold0879 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0879
Description:
Target: scaffold0879; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 4017 - 4249
Alignment:
| Q |
8 |
aaaatgacatgaacaacaaccaaaaggtatagaaaacacaccgtccacgaaataagaatataatttaaaactttaagccaggctgtcttaatgcatttta |
107 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4017 |
aaaatgacatgaacaaaaaccaaaaggtatagaaaacacaccatccacgaaataagaatataatttaaaactttaagccaggctgtcttaatgcatttga |
4116 |
T |
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| Q |
108 |
gaaattaagaaatcttataattcaagcttcggcaacactatataaagagttggaatgcaaacttaagcaatcacagtaactggctatcactcttccaagg |
207 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
4117 |
gaaattaagaaatcttataattcaagcttgggcaacactatataaagagttggaatgcaaacataagcaatcacagtaactagctatcactcttccaagg |
4216 |
T |
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| Q |
208 |
-actgagtacagaaatacactttcttaaaaaag |
239 |
Q |
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||||||||||||||||||| |||||||||||| |
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| T |
4217 |
aactgagtacagaaatacacattcttaaaaaag |
4249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 24421966 - 24421734
Alignment:
| Q |
8 |
aaaatgacatgaacaacaaccaaaaggtatagaaaacacaccgtccacgaaataagaatataatttaaaactttaagccaggctgtcttaatgcatttta |
107 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
24421966 |
aaaatgacatgaacaaaaaccaaaaggtatagaaaacacaccatccacgaaataagaatataatttaaaactttaagccaggctgtcttaatgcatttga |
24421867 |
T |
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| Q |
108 |
gaaattaagaaatcttataattcaagcttcggcaacactatataaagagttggaatgcaaacttaagcaatcacagtaactggctatcactcttccaagg |
207 |
Q |
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| T |
24421866 |
gaaattaagaaatcttataattcaagcttgggcaacactatataaagagttggaatgcaaacataagcaatcacagtaactagctatcactcttccaagg |
24421767 |
T |
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| Q |
208 |
-actgagtacagaaatacactttcttaaaaaag |
239 |
Q |
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| T |
24421766 |
aactgagtacagaaatacacattcttaaaaaag |
24421734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 24469757 - 24469989
Alignment:
| Q |
8 |
aaaatgacatgaacaacaaccaaaaggtatagaaaacacaccgtccacgaaataagaatataatttaaaactttaagccaggctgtcttaatgcatttta |
107 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
24469757 |
aaaatgacatgaacaaaaaccaaaaggtatagaaaacacaccatccacgaaataagaatataatttaaaactttaagccaggctgtcttaatgcatttga |
24469856 |
T |
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| Q |
108 |
gaaattaagaaatcttataattcaagcttcggcaacactatataaagagttggaatgcaaacttaagcaatcacagtaactggctatcactcttccaagg |
207 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
24469857 |
gaaattaagaaatcttataattcaagcttgggcaacactatataaagagttggaatgcaaacataagcaatcacagtaactagctatcactcttccaagg |
24469956 |
T |
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| Q |
208 |
-actgagtacagaaatacactttcttaaaaaag |
239 |
Q |
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||||||||||||||||||| |||||||||||| |
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| T |
24469957 |
aactgagtacagaaatacacattcttaaaaaag |
24469989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 51 - 239
Target Start/End: Complemental strand, 24478110 - 24477922
Alignment:
| Q |
51 |
tccacgaaataagaatataatttaaaactttaagccaggctgtcttaatgcattttagaaattaagaaatcttataattcaagcttcggcaacactatat |
150 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||||||||||||| || | ||||||| |||||||||||| | |||| | |||||||||| |
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| T |
24478110 |
tccacgaaataaaaatataattcaaaactttaagccaggctgtcttaatgcaattgaaaaattaa-aaatcttataatctatgcttggaaaacactatat |
24478012 |
T |
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| Q |
151 |
aaagagttggaatgcaaacttaagcaatcacagtaactggctatcactcttccaagg-actgagtacagaaatacactttcttaaaaaag |
239 |
Q |
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| T |
24478011 |
aaagagttagaatgcaaacttaagcaatcacagtaactagctatcactcttccaaggaactgagtacagaaatacacattcttaaaaaag |
24477922 |
T |
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