View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5262-Insertion-3 (Length: 218)
Name: NF5262-Insertion-3
Description: NF5262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5262-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 38608675 - 38608875
Alignment:
| Q |
8 |
cctcatgctacgagatgcaatgctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcataactctcaac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38608675 |
cctcatgctacgagatgcaatgctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcataactctcaac |
38608774 |
T |
|
| Q |
108 |
aacatgactattttcgccgttgatgatctttctatattctccggttctcaatcgta-atcagc-atgtgcgattccatatcataccgaatcattacttgt |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
38608775 |
aacatgactattttcgccgttgatgatctttctatattctccggttctcaatcgtacatcagcaatgtgcgattccatatcataccgaattattacttgt |
38608874 |
T |
|
| Q |
206 |
c |
206 |
Q |
| |
|
| |
|
|
| T |
38608875 |
c |
38608875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 38793458 - 38793658
Alignment:
| Q |
8 |
cctcatgctacgagatgcaatgctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcataactctcaac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38793458 |
cctcatgctacgagatgcaatgctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcataactctcaac |
38793557 |
T |
|
| Q |
108 |
aacatgactattttcgccgttgatgatctttctatattctccggttctcaatcgta-atcagc-atgtgcgattccatatcataccgaatcattacttgt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
38793558 |
aacatgactattttcgccgttgatgatctttctatattctccggttctcaatcgtacatcagcaatgtgcgattccatatcataccgaattattacttgt |
38793657 |
T |
|
| Q |
206 |
c |
206 |
Q |
| |
|
| |
|
|
| T |
38793658 |
c |
38793658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 38121448 - 38121248
Alignment:
| Q |
8 |
cctcatgctacgagatgcaatgctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcataactctcaac |
107 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38121448 |
cctcatgctacgagatgcaatggtaaggctccgtaataacggtttcagcatcctctcccttgctatgaaggtaaaatacgcagagctcataactctcaac |
38121349 |
T |
|
| Q |
108 |
aacatgactattttcgccgttgatgatctttctatattctccggttctcaatcgta-atcagc-atgtgcgattccatatcataccgaatcattacttgt |
205 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38121348 |
aacatgactattttcgctgttgatgatctttctatattctccggttctcaatcgtatatcagcaatgtgcgattccatatcataccgaatcattacttgt |
38121249 |
T |
|
| Q |
206 |
c |
206 |
Q |
| |
|
| |
|
|
| T |
38121248 |
c |
38121248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 28731022 - 28730822
Alignment:
| Q |
8 |
cctcatgctacgagatgcaatgctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcataactctcaac |
107 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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|
| T |
28731022 |
cctcatgctacgagacacaacgctcaggctccgtaataacggtttcagcatcctctcccttgcaatgaaggtaaaatacgaagagctcataactctcaac |
28730923 |
T |
|
| Q |
108 |
aacatgactattttcgccgttgatgatctttctatattctccggttctcaatcgta-atcagc-atgtgcgattccatatcataccgaatcattacttgt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
28730922 |
aacatgactattttcgccgttgatgatctttctatattctccggttctcaatcgtatatcagcaatgtgcgattccatatcataccgaatcgttacttgt |
28730823 |
T |
|
| Q |
206 |
c |
206 |
Q |
| |
|
| |
|
|
| T |
28730822 |
c |
28730822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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