View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5262-Insertion-5 (Length: 130)
Name: NF5262-Insertion-5
Description: NF5262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5262-Insertion-5 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 8e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 8e-62
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 10201446 - 10201323
Alignment:
| Q |
7 |
agtattgtggctagtatcgcagatacttgtcgaggatcatacacacaagccaaaattttaagttcatcttccatttcttgtggttcaattgttgtatggt |
106 |
Q |
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| T |
10201446 |
agtattgtggctagtatcgcagatacttgtcgaggatcatacacacaagccaaaattttaagttcatcttccatttcttgtggttcaattgttgtatggt |
10201347 |
T |
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| Q |
107 |
tgtttgtaaacattttctcttccc |
130 |
Q |
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|||||| ||||||||||||||||| |
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| T |
10201346 |
tgtttgaaaacattttctcttccc |
10201323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 51740651 - 51740528
Alignment:
| Q |
7 |
agtattgtggctagtatcgcagatacttgtcgaggatcatacacacaagccaaaattttaagttcatcttccatttcttgtggttcaattgttgtatggt |
106 |
Q |
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|||||||| || ||||| | |||||||| ||||||||||| ||||||||||||||| ||| || |||||||| |||||||||||||| | |||||||| |
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| T |
51740651 |
agtattgttgcaagtattgatgatacttgacgaggatcatatacacaagccaaaattcgaagctcgtcttccatctcttgtggttcaatagctgtatggt |
51740552 |
T |
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| Q |
107 |
tgtttgtaaacattttctcttccc |
130 |
Q |
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| |||| |||||||||||||||| |
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| T |
51740551 |
tatttgagaacattttctcttccc |
51740528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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