View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5262_high_1 (Length: 714)

Name: NF5262_high_1
Description: NF5262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5262_high_1
NF5262_high_1
[»] chr1 (1 HSPs)
chr1 (8-700)||(11998393-11999078)


Alignment Details
Target: chr1 (Bit Score: 605; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 8 - 700
Target Start/End: Complemental strand, 11999078 - 11998393
Alignment:
Q  8 aagcaaaggaccattttgggtatttactcactcttaatgtaaattatttgcgaaattcaaacttgatcattgcaaaaatctaattaaaaaagtatactta 107  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11999078 aagcaaaggaccattttgggtatttactcacccttaatgtaaattatttgcgaaattcaaacttgatcattgcaaaaatctaattaaaaaagtatactta 11998979  T
Q  108 tcttatgaaataactacataacttctatataaattcaggttgaggttcagggattataaccaaacgacattaataatgaagtgaaacacaaactataaga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11998978 tcttatgaaataactacataacttctatataaattcaggttgaggttcagggattataaccaaacgacattaataatgaagtgaaacacaaactataaga 11998879  T
Q  208 aacaaataatactgaaaatttcataagagataaacatgtcactaaaaatacacatctaattacttgtacaatgcaagtagagttaattaataatttcatg 307  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11998878 aacaaataatactgaaaatttcaaaagagataaacatgtcactagaaatacacatctaattacttgtacaatgcaagtagagttaatcaataatttcatg 11998779  T
Q  308 tccatagagaaaaatgaacatgagaaatatagttgtttaattattgccacnnnnnnnctaatattagaatttaattaagatacaaaaatattaaagcctc 407  Q
    |||||||||||   |||||||||||||| ||||||||||    |||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  11998778 tccatagagaa---tgaacatgagaaatgtagttgttta----ttgccacaaaaaaactaatattagaatttaattaagatacaaaaatattaaagcctc 11998686  T
Q  408 aaagtaagatcaggagatgtactagatgtttgttgaggaggttcagttgctacaaaactagtattcaaatttgaattatgaacactttgatttatctgcc 507  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11998685 aaagtaagatcaggagatgtagtagatgtttgttgaggaggttcagttgctacaaaactagtattcaaatttgaattatgaacactttgatttatctgcc 11998586  T
Q  508 tgaaacttccaggccaaaatacgccaacatcgtcattatgcataaacatcggtgctgctccaaaacaatctttctcaaatttcgctgtaggtctcatatc 607  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11998585 tgaaacttccaggccaaaatatgccaacatcgtcattatgcataaacatcggtgctgctccaaaacaatctttctcgaatttcgctgtaggtctcatatc 11998486  T
Q  608 atgagccctcatcagcatcgacaacgatgatggcatatggttttggtgcattgcagcatgagcttgaataccaagaggatgaaaagaagaaga 700  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11998485 atgagccctcatcagcatcgacgacgatgatggcatatggttttggtgcattgcagcatgagcttgaataccaagaggatgaaaagaagaaga 11998393  T

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