View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5262_high_11 (Length: 331)
Name: NF5262_high_11
Description: NF5262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5262_high_11 |
 | |
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| [»] chr4 (4 HSPs) |
| |
|
| [»] chr6 (3 HSPs) |
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|
Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 46218346 - 46218661
Alignment:
| Q |
17 |
aggttgttggttgataaggaggatatgtggtaccgagacttgaaagctcgttatggggagctgggg-gtggttgaaagagggtggcaggtattgttcggc |
115 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
46218346 |
aggttgttggttgataaggaggacatgtggtaccgagacttgaaagctcgttatggggagctggggggtggttgaaagagggtggcaggtattgttcggc |
46218445 |
T |
|
| Q |
116 |
ctggtggcggtctctgagttggattagagaagggattggtgagggtgtagggagttggtttgaaaataacactcgtagggtgattggtgacggaaagggt |
215 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46218446 |
ctggaggcggtctctgagttggattagagaagggattggtgagggtgtaaggagttggtttgaaaataacactcgtagggtgattggtgacggaaagggt |
46218545 |
T |
|
| Q |
216 |
actttattttggtatgatatttgggtggaggaaattccgttgaatcttaaatttccctgactctttgcgttgtctattaacaaggagcgttcgatggagg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46218546 |
actttattttggtatgatatttgggtgggggaaattccattgaatcttaaatttccccgactctttgcgttgtctattaacaaggagcgttcgatggagg |
46218645 |
T |
|
| Q |
316 |
agacggtgagggtgtt |
331 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
46218646 |
agatggtgagggtgtt |
46218661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 259
Target Start/End: Complemental strand, 19498262 - 19498154
Alignment:
| Q |
151 |
ttggtgagggtgtagggagttggtttgaaaataacactcgtagggtgattggtgacggaaagggtactttattttggtatgatatttgggtggaggaaat |
250 |
Q |
| |
|
|||||||||| ||||| | |||||||||||||||||| |||||||| | || || ||| || ||||||||| ||| |||| ||||| || | |||||| |
|
|
| T |
19498262 |
ttggtgagggagtaggaaactggtttgaaaataacacttgtagggtggtcggggatggatgggatactttattctggcatgacatttgtgtaggggaaat |
19498163 |
T |
|
| Q |
251 |
tccgttgaa |
259 |
Q |
| |
|
||| ||||| |
|
|
| T |
19498162 |
tcctttgaa |
19498154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 272
Target Start/End: Complemental strand, 54846455 - 54846334
Alignment:
| Q |
151 |
ttggtgagggtgtagggagttggtttgaaaataacactcgtagggtgattggtgacggaaagggtactttattttggtatgatatttgggtggaggaaat |
250 |
Q |
| |
|
|||| |||||||||| ||| ||||||||| ||||||||||| || | || ||||| || | || | |||||| ||| |||| |||||||||| ||||| |
|
|
| T |
54846455 |
ttggggagggtgtagcgagatggtttgaagataacactcgtcggattatgggtgatgggagggacattttattctggcatgacatttgggtgggagaaat |
54846356 |
T |
|
| Q |
251 |
tccgttgaatcttaaatttccc |
272 |
Q |
| |
|
||| ||||| | ||||||||| |
|
|
| T |
54846355 |
tcctttgaaaataaaatttccc |
54846334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 12726851 - 12726779
Alignment:
| Q |
106 |
attgttcggcctggtggcggtctctgagttggattagagaagggattggtgagggtgtagggagttggtttga |
178 |
Q |
| |
|
|||||||||| |||||||||||| || || || | |||||||| ||||||||||||| | ||||||||||| |
|
|
| T |
12726851 |
attgttcggcttggtggcggtctgtgggtagggtccgagaaggggttggtgagggtgttgaaagttggtttga |
12726779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 85 - 331
Target Start/End: Original strand, 9312328 - 9312574
Alignment:
| Q |
85 |
ggttgaaagagggtggcaggtattgttcggcctggtggcggtctctgagttggattagagaagggattggtgagggtgtagggagttggtttgaaaataa |
184 |
Q |
| |
|
|||||||||||||||||||||| ||||| || ||| || ||||| ||||| |||||| ||||||||||||| ||||||| |||||||| ||||||||||| |
|
|
| T |
9312328 |
ggttgaaagagggtggcaggtactgttcagcttggaggtggtctttgagtaggattacagaagggattggtaagggtgttgggagttgatttgaaaataa |
9312427 |
T |
|
| Q |
185 |
cactcgtagggtgattggtgacggaaagggtactttattttggtatgatatttgggtggaggaaattccgttgaatcttaaatttccctgactctttgcg |
284 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||| |||||| |||||||||||| ||||||||||| |
|
|
| T |
9312428 |
cacttgtagggtagttggtgacggaaagggtacattattttggcatgatatttgggtgggggaaattctgttgaaacttaaatttccccgactctttgcg |
9312527 |
T |
|
| Q |
285 |
ttgtctattaacaaggagcgttcgatggaggagacggtgagggtgtt |
331 |
Q |
| |
|
||||| | || |||||| ||||| ||||||||| ||||||||||| |
|
|
| T |
9312528 |
ttgtccgtcaataaggagtgttcggtggaggagatagtgagggtgtt |
9312574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 85 - 328
Target Start/End: Original strand, 13214956 - 13215197
Alignment:
| Q |
85 |
ggttgaaagagggtggcaggtattgttcggcctggtggcggtctctgagttggattagagaagggattggtgagggtgtagggagttggtttgaaaataa |
184 |
Q |
| |
|
|||||||||||||||| ||| || ||| || ||||||||||||||| || | |||||||||||||| |||||||| || ||||| ||||||||||| || |
|
|
| T |
13214956 |
ggttgaaagagggtggtaggcatagttaagcttggtggcggtctctgtgtagcattagagaagggataggtgagggagt-gggagctggtttgaaaacaa |
13215054 |
T |
|
| Q |
185 |
cactcgtagggtgattggtgacggaaagggtactttattttggtatgatatttgggtggaggaaattccgttgaatcttaaatttccctgactctttgcg |
284 |
Q |
| |
|
||||||| |||| |||| || || || || |||||||||||| ||||||||||| ||| ||||||||| |||| | ||||||||| | || |||||| |
|
|
| T |
13215055 |
tactcgtaaggtggttggcgatgggaaagggactttattttggcatgatatttggatgg-ggaaattcctctgaaaataaaatttccccgcctatttgcg |
13215153 |
T |
|
| Q |
285 |
ttgtctattaacaaggagcgttcgatggaggagacggtgagggt |
328 |
Q |
| |
|
|||||| | || |||||| ||||| ||||| ||| ||||||||| |
|
|
| T |
13215154 |
ttgtctgtcaataaggagtgttcggtggagaagatggtgagggt |
13215197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 241
Target Start/End: Complemental strand, 2821742 - 2821654
Alignment:
| Q |
153 |
ggtgagggtgtagggagttggtttgaaaataacactcgtagggtgattggtgacggaaagggtactttattttggtatgatatttgggt |
241 |
Q |
| |
|
||||||||||| ||||| |||||||| | |||| ||||||||| ||||||| || | | ||||||||||||| |||||| |||||| |
|
|
| T |
2821742 |
ggtgagggtgttgggaggtggtttgatgagaacattcgtagggtagttggtgatggtaggaatactttattttggcatgataattgggt |
2821654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 21 - 256
Target Start/End: Original strand, 24220291 - 24220526
Alignment:
| Q |
21 |
tgttggttgataaggaggatatgtggtaccgagacttgaaagctcgttatggggagctgggggtggttgaaagagggtggcaggtattgttcggcctggt |
120 |
Q |
| |
|
||||| |||||| ||||| | ||||||| || | |||||||| |||||||| || | ||||| |||||| ||||||||| ||| || |||| ||||||| |
|
|
| T |
24220291 |
tgttgattgatagggagggtctgtggtatcgtgtattgaaagcccgttatggtgaacagggggcggttgagagagggtggtaggcatagttcagcctggt |
24220390 |
T |
|
| Q |
121 |
ggcggtctctgagttggattagagaagggattggtgagggtgtagggagttggtttgaaaataacactcgtagggtgattggtgacggaaagggtacttt |
220 |
Q |
| |
|
||| ||||||| | || ||||||||||||| ||||||||||| ||||| |||||||||| ||||||||| |||||| ||||||| || || ||||||| |
|
|
| T |
24220391 |
ggcagtctctgtctagggttagagaagggataggtgagggtgtggggagctggtttgaaagtaacactcggagggtggttggtgatgggaaaagtacttt |
24220490 |
T |
|
| Q |
221 |
attttggtatgatatttgggtggaggaaattccgtt |
256 |
Q |
| |
|
||||||| ||||||||||| || |||||||||||| |
|
|
| T |
24220491 |
attttggcatgatatttggacgggggaaattccgtt |
24220526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 88 - 253
Target Start/End: Complemental strand, 18697787 - 18697622
Alignment:
| Q |
88 |
tgaaagagggtggcaggtattgttcggcctggtggcggtctctgagttggattagagaagggattggtgagggtgtagggagttggtttgaaaataacac |
187 |
Q |
| |
|
|||| ||||||||||| |||| ||||| |||||| |||| | || ||||| | || |||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
18697787 |
tgaaggagggtggcagccattgctcggcttggtggtggtccttatgtaggattcgcgaggggattggtgagggggtaggaagttggtttgaaaataacac |
18697688 |
T |
|
| Q |
188 |
tcgtagggtgattggtgacggaaagggtactttattttggtatgatatttgggtggaggaaattcc |
253 |
Q |
| |
|
|||||||||| |||| || || |||| | ||||||| ||| |||| |||||||||| ||||||||| |
|
|
| T |
18697687 |
tcgtagggtggttggggatggcaaggatgctttattctggcatgacatttgggtgggggaaattcc |
18697622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 162
Target Start/End: Original strand, 1844407 - 1844484
Alignment:
| Q |
85 |
ggttgaaagagggtggcaggtattgttcggcctggtggcggtctctgagttggattagagaagggattggtgagggtg |
162 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||| |||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
1844407 |
ggttgaaagagggtggcagccattgttcggcttggtggtggtccttgagtaagattagagaagggattggtgagggtg |
1844484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 267
Target Start/End: Original strand, 40903738 - 40903926
Alignment:
| Q |
79 |
gggggtggttgaaagagggtggcaggtattgttcggcctggtggcggtctctgagttggattagagaagggattggtgagggtgtagggagttggtttga |
178 |
Q |
| |
|
||||| |||||||||| || || || |||||||||| ||||||| ||| || || || | | |||||| | |||||||| ||||| |||||||||| |
|
|
| T |
40903738 |
gggggcggttgaaagaaggaggtagccattgttcggcttggtggcaatctttgtgtaggttgcgtgaagggttaggtgagggcgtaggttgttggtttga |
40903837 |
T |
|
| Q |
179 |
aaataacactcgtagggtgattggtgacggaaagggtactttattttggtatgatatttgggtggaggaaattccgttgaatcttaaat |
267 |
Q |
| |
|
|||||||||||| ||||| | ||| | || ||| | || || || ||| ||||||||||||| | |||||| || ||||| ||||||| |
|
|
| T |
40903838 |
aaataacactcgaagggtagtgggtaatggcaagagcacctttttctggcatgatatttgggttggggaaatccctttgaaacttaaat |
40903926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 21 - 256
Target Start/End: Original strand, 13063322 - 13063557
Alignment:
| Q |
21 |
tgttggttgataaggaggatatgtggtaccgagacttgaaagctcgttatggggagctgggggtggttgaaagagggtggcaggtattgttcggcctggt |
120 |
Q |
| |
|
||||| |||||||||||| ||||||| |||| |||||||| |||||||| ||| ||||| |||||||||||||||| ||| || |||| |||| || |
|
|
| T |
13063322 |
tgttgattgataaggagggcctgtggtatcgagtattgaaagcccgttatggtgaggagggggcggttgaaagagggtggtaggcatagttctgcctagt |
13063421 |
T |
|
| Q |
121 |
ggcggtctctgagttggattagagaagggattggtgagggtgtagggagttggtttgaaaataacactcgtagggtgattggtgacggaaagggtacttt |
220 |
Q |
| |
|
|||||||| || || || ||||||||||||| ||||||||||| || || |||||||| | ||||| ||| |||||| |||| || ||||| |||||| |
|
|
| T |
13063422 |
ggcggtctttgtgtagggttagagaagggataggtgagggtgtgggaagctggtttgatagtaacattcggagggtggttggggatggaaaaaatacttt |
13063521 |
T |
|
| Q |
221 |
attttggtatgatatttgggtggaggaaattccgtt |
256 |
Q |
| |
|
|||||| ||||||||||| || |||||||||||| |
|
|
| T |
13063522 |
attttgtcatgatatttggacgggggaaattccgtt |
13063557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 272
Target Start/End: Complemental strand, 21376595 - 21376429
Alignment:
| Q |
106 |
attgttcggcctggtggcggtctctgagttggattagagaagggattggtgagggtgtagggagttggtttgaaaataacactcgtagggtgattggtga |
205 |
Q |
| |
|
|||||||||| ||||||||||| ||||| ||||| | |||||| |||||||||| ||||| | |||||||| ||||||||||||||||| ||||| | |
|
|
| T |
21376595 |
attgttcggcttggtggcggtccttgagtaggattcgtgaaggggttggtgagggagtaggcaaatggtttgataataacactcgtagggtagttggtaa |
21376496 |
T |
|
| Q |
206 |
cggaaagggtactttattttggtatgatatttgggtggaggaaattccgttgaatcttaaatttccc |
272 |
Q |
| |
|
|||| ||| |||| ||||||| |||| |||||||| | |||||||||| | || |||||||||||| |
|
|
| T |
21376495 |
tggaaggggaacttcattttggcatgacatttgggttggggaaattccgctaaaacttaaatttccc |
21376429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 21 - 256
Target Start/End: Complemental strand, 44363148 - 44362911
Alignment:
| Q |
21 |
tgttggttgataaggaggatatgtggtaccgagacttgaaagctcgttatggggagctgggggtg--gttgaaagagggtggcaggtattgttcggcctg |
118 |
Q |
| |
|
||||| |||||| ||||| ||||||||| |||| |||||||| || ||||| ||| ||||| | ||||| ||||||||| ||| || ||| || || |
|
|
| T |
44363148 |
tgttgattgatagggagggtatgtggtatcgagtattgaaagcccgatatggtgaggagggggggcggttgagagagggtggtaggcatagtttagcttg |
44363049 |
T |
|
| Q |
119 |
gtggcggtctctgagttggattagagaagggattggtgagggtgtagggagttggtttgaaaataacactcgtagggtgattggtgacggaaagggtact |
218 |
Q |
| |
|
||||||||||||| || || ||||||||||||| ||||||||||| ||||| |||||||| | ||||| || |||||| ||||||| || || || | |
|
|
| T |
44363048 |
gtggcggtctctgtgtagggttagagaagggataggtgagggtgtggggagctggtttgatagtaacattccgagggtggttggtgatgggaaaaatatt |
44362949 |
T |
|
| Q |
219 |
ttattttggtatgatatttgggtggaggaaattccgtt |
256 |
Q |
| |
|
||||||| | ||||||||||| || |||||||||||| |
|
|
| T |
44362948 |
ttatttttgcatgatatttggacgggggaaattccgtt |
44362911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 259
Target Start/End: Complemental strand, 31396445 - 31396206
Alignment:
| Q |
21 |
tgttggttgataaggaggatatgtggtaccgagacttgaaagctcgttatggggagctggg--ggtggttgaaagagggtggcaggtattgttcggcctg |
118 |
Q |
| |
|
|||||||||||||||| | | |||||||||||| |||||||||||| || |||||| ||| || | ||||||||||| ||||| |||| ||||| || |
|
|
| T |
31396445 |
tgttggttgataaggatggtctgtggtaccgagtcttgaaagctcggtacggggaggagggagggcgtttgaaagagggaggcagccattgctcggcttg |
31396346 |
T |
|
| Q |
119 |
gtggcggtctctgagttggattagagaagggattggtgagggtgtagggagttggtttgaaaataacactcgtagggtgattggtgacggaaagggtact |
218 |
Q |
| |
|
||| || || | || ||||| | || ||| ||||||||| ||||| | ||||||||||||||||||||||||||| | | || |||| || |||| |
|
|
| T |
31396345 |
gtgacgttccttatgtaggattcgtgagggggttggtgagga-gtaggaaactggtttgaaaataacactcgtagggtggtcagggatggaatggatact |
31396247 |
T |
|
| Q |
219 |
ttattttggtatgatatttgggtggaggaaattccgttgaa |
259 |
Q |
| |
|
||||| ||| |||| |||||||| | ||| ||||| ||||| |
|
|
| T |
31396246 |
ttattctggcatgacatttgggtaggggacattcctttgaa |
31396206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 21 - 251
Target Start/End: Complemental strand, 36731543 - 36731311
Alignment:
| Q |
21 |
tgttggttgataaggaggatatgtggtaccgagacttgaaagctcgttatggggagctggg--ggtggttgaaagagggtggcaggtattgttcggcctg |
118 |
Q |
| |
|
|||||||||||||||| | |||||||||| | ||||||||||||||| ||| || ||| || ||||||| ||||||||||| |||| ||||| || |
|
|
| T |
36731543 |
tgttggttgataaggaagggttgtggtaccgggtcttgaaagctcgttacgggaaggagggagggaggttgaaggagggtggcagccattgctcggcttg |
36731444 |
T |
|
| Q |
119 |
gtggcggtctctgagttggattagagaagggattggtgagggtgtagggagttggtttgaaaataacactcgtagggtgattggtgacggaaagggtact |
218 |
Q |
| |
|
|||||||||| | || | ||| | || |||||||||||| | ||||| |||||||||||||||||||||||||||||| |||| || || || | |||| |
|
|
| T |
36731443 |
gtggcggtctttatgtagaattcgcgaggggattggtgagcgggtaggaagttggtttgaaaataacactcgtagggtggttggggatggcaatgatact |
36731344 |
T |
|
| Q |
219 |
ttattttggtatgatatttgggtggaggaaatt |
251 |
Q |
| |
|
||||| ||| |||| |||||||||| ||||||| |
|
|
| T |
36731343 |
ttattctggcatgacatttgggtgggggaaatt |
36731311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 256
Target Start/End: Original strand, 35076526 - 35076763
Alignment:
| Q |
21 |
tgttggttgataaggaggatatgtggtaccgagacttgaaagctcgttatggggagctgggggtg--gttgaaagagggtggcaggtattgttcggcctg |
118 |
Q |
| |
|
||||| |||||| ||| | | ||||||| |||| ||||||||||||||||| ||| ||||| | ||||| |||||||| || || |||| | || |
|
|
| T |
35076526 |
tgttgattgatagggatggtttgtggtatcgagttttgaaagctcgttatggtgaggagggggcgcggttgagagagggtgatgggcatagttcaccttg |
35076625 |
T |
|
| Q |
119 |
gtggcggtctctgagttggattagagaagggattggtgagggtgtagggagttggtttgaaaataacactcgtagggtgattggtgacggaaagggtact |
218 |
Q |
| |
|
|||||||||| || || || ||||||||||||||||||||||||| || ||||||||||||| ||||||||| ||| || ||||||| || || |||| |
|
|
| T |
35076626 |
gtggcggtctttgtgtagggttagagaagggattggtgagggtgtgggaagttggtttgaaagtaacactcggaggatggttggtgatgggaaaaatact |
35076725 |
T |
|
| Q |
219 |
ttattttggtatgatatttgggtggaggaaattccgtt |
256 |
Q |
| |
|
||||||||| ||||||||||| || |||||||||||| |
|
|
| T |
35076726 |
ttattttggcatgatatttggacgggggaaattccgtt |
35076763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 257
Target Start/End: Original strand, 39352000 - 39352172
Alignment:
| Q |
85 |
ggttgaaagagggtggcaggtattgttcggcctggtggcggtctctgagttggattagagaagggattggtgagggtgtagggagttggtttgaaaataa |
184 |
Q |
| |
|
|||||||||||||||| ||| || |||| || |||||||||||||| || || ||| ||||||||| | ||| || || ||||| ||||||||||| || |
|
|
| T |
39352000 |
ggttgaaagagggtggtaggcatagttcagcttggtggcggtctctatgtaggtttacagaagggatagatgaaggagtggggagctggtttgaaaacaa |
39352099 |
T |
|
| Q |
185 |
cactcgtagggtgattggtgacggaaagggtactttattttggtatgatatttgggtggaggaaattccgttg |
257 |
Q |
| |
|
||||||||||||| ||||||| || || | |||||||||||| ||||||||||| ||| |||||||| |||| |
|
|
| T |
39352100 |
cactcgtagggtggttggtgatgggaaatgaactttattttggcatgatatttggatgggggaaattctgttg |
39352172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 21 - 256
Target Start/End: Original strand, 20128923 - 20129160
Alignment:
| Q |
21 |
tgttggttgataaggaggatatgtggtaccgagacttgaaagctcgttatggggagctgggggtg--gttgaaagagggtggcaggtattgttcggcctg |
118 |
Q |
| |
|
||||| |||||| ||||| ||||||||| |||| |||||||| || ||||| ||| ||||| | ||||| ||||||||| ||| || ||| || || |
|
|
| T |
20128923 |
tgttgattgatagggagggtatgtggtatcgagtattgaaagcccgatatggtgaggagggggggcggttgagagagggtggtaggcatagtttagcttg |
20129022 |
T |
|
| Q |
119 |
gtggcggtctctgagttggattagagaagggattggtgagggtgtagggagttggtttgaaaataacactcgtagggtgattggtgacggaaagggtact |
218 |
Q |
| |
|
||||||||||||| || || ||||||||||||| ||||||||||| ||||| |||||||| | ||||| || |||||| ||||||| || || || | |
|
|
| T |
20129023 |
gtggcggtctctgtgtagggttagagaagggataggtgagggtgtggggagctggtttgatagtaacattccgagggtggttggtgatgggaaaaatatt |
20129122 |
T |
|
| Q |
219 |
ttattttggtatgatatttgggtggaggaaattccgtt |
256 |
Q |
| |
|
||||||| | ||||||||||| || |||||||||||| |
|
|
| T |
20129123 |
ttatttttgcatgatatttggacgggggaaattccgtt |
20129160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 11649797 - 11649558
Alignment:
| Q |
21 |
tgttggttgataaggaggatatgtggtaccgagacttgaaagctcgttatggggagctggg--ggtggttgaaagagggtggcaggtattgttcggcctg |
118 |
Q |
| |
|
|||||||||||||||| | | ||||||| || | ||| ||||||| ||||||||| ||| || | ||||||||||| ||||| |||| ||||| || |
|
|
| T |
11649797 |
tgttggttgataaggatggtttgtggtatcgtgtcttaaaagctcagtatggggaggagggagggcgtttgaaagagggaggcagccattgctcggcttg |
11649698 |
T |
|
| Q |
119 |
gtggcggtctctgagttggattagagaagggattggtgagggtgtagggagtt-----ggtttgaaaataacactcgtagggtgattggtgacggaaagg |
213 |
Q |
| |
|
|||||| || | || ||||| | || ||| |||||||||| ||||| | || |||||||||||||||||| ||||||| | || || |||| || |
|
|
| T |
11649697 |
gtggcgttccttatgtaggattcgcgagggggttggtgagggagtaggcaattatattggtttgaaaataacactcttagggtggtcggggatggaaggg |
11649598 |
T |
|
| Q |
214 |
gtactttattttggtatgatatttgggtggaggaaattcc |
253 |
Q |
| |
|
||||||||| ||| |||| |||||||| | ||||||||| |
|
|
| T |
11649597 |
atactttattctggcatgacatttgggtaggggaaattcc |
11649558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 178
Target Start/End: Complemental strand, 32303745 - 32303652
Alignment:
| Q |
85 |
ggttgaaagagggtggcaggtattgttcggcctggtggcggtctctgagttggattagagaagggattggtgagggtgtagggagttggtttga |
178 |
Q |
| |
|
||||||||||||| || | |||||||||| |||||||||||| || || || | |||||||| ||||||||||||| || ||||||||||| |
|
|
| T |
32303745 |
ggttgaaagagggaggtcgtcattgttcggcttggtggcggtctgtgggtagggtccgagaagggtttggtgagggtgttggaagttggtttga |
32303652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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