View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5262_high_20 (Length: 248)
Name: NF5262_high_20
Description: NF5262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5262_high_20 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 118 - 248
Target Start/End: Original strand, 36773864 - 36773996
Alignment:
| Q |
118 |
tgccattaattttaaacgtgccccatacgacattaaacacagacaaacaatataaaagagaaagacataacattgagataatcg--acccgaaaagccaa |
215 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36773864 |
tgccattgattttaaacgtgccccatacgacattaaacacagacaaacaatataaaagagaaagacataacattgagataatcggaacccgaaaagccaa |
36773963 |
T |
|
| Q |
216 |
agaccaaataagtgcatgccttgtaggaagaac |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
36773964 |
agaccaaataagtgcatgccttgtaggaagaac |
36773996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 36773749 - 36773786
Alignment:
| Q |
18 |
actttgatactccatcatcgtccgtgtgtcgcctgcag |
55 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
36773749 |
actttgatcctccatcatcgtccgtgtgtcgcctgcag |
36773786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University