View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5262_high_21 (Length: 241)
Name: NF5262_high_21
Description: NF5262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5262_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 22 - 233
Target Start/End: Original strand, 33282459 - 33282665
Alignment:
| Q |
22 |
ttggcggttgtttcgagataggttgtctacgaaggacaatctattccgtcgtagtgtgatatagacgtcaattcaa--gggagtgtgtggctggttgtgg |
119 |
Q |
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| T |
33282459 |
ttggcggttgtttcgagacaggttgcctacgaaggacaatctattccgtcgtagtgtgatatagacgccaattcaagggggagtgtgtggctggttgcgg |
33282558 |
T |
|
| Q |
120 |
ttcgtttgaatcatctaatcatctgttgttgcattgtaattgtaannnnnnnggttccatctcacattttatctatagatggctgagtatttctgctgtt |
219 |
Q |
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|||||||||||||||||||||| |||| || |||||||||| | |||||||||| |||||||||||||||||||||| |||||||||| ||| |
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| T |
33282559 |
ttcgtttgaatcatctaatcatttgttatt-cattgtaatttt------tttggttccatctgacattttatctatagatggctgggtatttctgcggtt |
33282651 |
T |
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| Q |
220 |
gtccctgttcatat |
233 |
Q |
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|||||| ||||||| |
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| T |
33282652 |
gtcccttttcatat |
33282665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 160
Target Start/End: Original strand, 5726785 - 5726921
Alignment:
| Q |
22 |
ttggcggttgtttcgagataggttgtctacgaaggacaatctattccgtcgtagtgtgatatagacgtcaattcaagggagtgtgtggctggttgtggtt |
121 |
Q |
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|||||||||||||| ||| |||||| |||||||||||| |||||| || | |||||||||| |||| ||||||||||||||||||||||| ||| |||| |
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| T |
5726785 |
ttggcggttgtttcaagacaggttgcctacgaaggacagtctatttcgacatagtgtgata--gacgccaattcaagggagtgtgtggctgcttgcggtt |
5726882 |
T |
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| Q |
122 |
cgtttgaatcatctaatcatctgttgttgcattgtaatt |
160 |
Q |
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| T |
5726883 |
cgtttgaatcatctaatcatatgttaatgcattgtaatt |
5726921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 22 - 160
Target Start/End: Original strand, 5760647 - 5760783
Alignment:
| Q |
22 |
ttggcggttgtttcgagataggttgtctacgaaggacaatctattccgtcgtagtgtgatatagacgtcaattcaagggagtgtgtggctggttgtggtt |
121 |
Q |
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|||||||||||||| ||| |||||| |||||||||||| |||||| || | |||||||||| |||| |||||||||||||||| |||||| ||| |||| |
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| T |
5760647 |
ttggcggttgtttcaagacaggttgcctacgaaggacagtctatttcgacatagtgtgata--gacgccaattcaagggagtgtctggctgcttgcggtt |
5760744 |
T |
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| Q |
122 |
cgtttgaatcatctaatcatctgttgttgcattgtaatt |
160 |
Q |
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|||||||||||||||||||| |||| |||||||||||| |
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| T |
5760745 |
cgtttgaatcatctaatcatttgttaatgcattgtaatt |
5760783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 160
Target Start/End: Original strand, 18650555 - 18650691
Alignment:
| Q |
22 |
ttggcggttgtttcgagataggttgtctacgaaggacaatctattccgtcgtagtgtgatatagacgtcaattcaagggagtgtgtggctggttgtggtt |
121 |
Q |
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|||||||||||||| ||| |||||| |||||||||||| |||||| || | |||||||||| |||| ||||||||||||||||||||||| ||| |||| |
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| T |
18650555 |
ttggcggttgtttcaagacaggttgcctacgaaggacagtctatttcgacatagtgtgata--gacgccaattcaagggagtgtgtggctgcttgcggtt |
18650652 |
T |
|
| Q |
122 |
cgtttgaatcatctaatcatctgttgttgcattgtaatt |
160 |
Q |
| |
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|||||||||||||||||||| |||| |||||||||||| |
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| T |
18650653 |
cgtttgaatcatctaatcatatgttaatgcattgtaatt |
18650691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 22 - 160
Target Start/End: Original strand, 18689979 - 18690115
Alignment:
| Q |
22 |
ttggcggttgtttcgagataggttgtctacgaaggacaatctattccgtcgtagtgtgatatagacgtcaattcaagggagtgtgtggctggttgtggtt |
121 |
Q |
| |
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|||||||||||||| ||| |||||| |||||||||||| |||||| || | |||||||||| |||| |||||||||||||||| |||||| ||| |||| |
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| T |
18689979 |
ttggcggttgtttcaagacaggttgcctacgaaggacagtctatttcgacatagtgtgata--gacgccaattcaagggagtgtctggctgcttgcggtt |
18690076 |
T |
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| Q |
122 |
cgtttgaatcatctaatcatctgttgttgcattgtaatt |
160 |
Q |
| |
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|||||||||||||||||||| |||| |||||||||||| |
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| T |
18690077 |
cgtttgaatcatctaatcatttgttaatgcattgtaatt |
18690115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 27708637 - 27708587
Alignment:
| Q |
22 |
ttggcggttgtttcgagataggttgtctacgaaggacaatctattccgtcg |
72 |
Q |
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|||| |||||||||||||||||||| |||| ||||||||||| || ||||| |
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| T |
27708637 |
ttggtggttgtttcgagataggttgcctactaaggacaatctttttcgtcg |
27708587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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