View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5262_high_7 (Length: 439)
Name: NF5262_high_7
Description: NF5262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5262_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 16 - 425
Target Start/End: Original strand, 7523572 - 7523981
Alignment:
| Q |
16 |
atgatgatggaattggaagaagaaaatgaattcgatcagcaaatggaagaagaagacgatgaagaagagattacccaggaagatgcctgggctgtgattt |
115 |
Q |
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| T |
7523572 |
atgatgatggatttggaagaagaaaatgaattcgatcagcaaatggaagaagaagacgatgaagaagagattacccaggaagatgcctgggctgtgattt |
7523671 |
T |
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| Q |
116 |
ctgcttattttgaagaaaaaggacttgtacgtcaacagcttgattcctttgatgaattcattcagaacacgatgcaggagatagtggatgaatccgctga |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7523672 |
ctgcttattttgaagaaaaaggacttgtacgtcaacagcttgattcctttgatgaattcattcagaacacgatgcaggagatagttgatgaatccgctga |
7523771 |
T |
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| Q |
216 |
tatcgaaattcgacctgaatctcagcacaatcctggacatcagtctgatttcgctgaggtagtttgataagcacttacttagataatcacttttttcaat |
315 |
Q |
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| T |
7523772 |
tatcgaaattcgacccgaatctcagcacaatcctggacatcagtctgatttcgctgaggtagtttgataagcacttacttagataatcacttttttcaat |
7523871 |
T |
|
| Q |
316 |
tagatgattaaatttggttgttgttacggattttcaattttcaatataacgtggttgtgagaaaagaaagaaaaaagctgttcacaatgagaagtgtttg |
415 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7523872 |
tagatgattaaatttggttgttgttgcggattttcaattttcaatataacgtggttgtgaaaaaagaaagaaaaaagctgttcacaatgagaagtgtttg |
7523971 |
T |
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| Q |
416 |
tagggtttgt |
425 |
Q |
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| T |
7523972 |
tagggtttgt |
7523981 |
T |
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