View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5262_low_10 (Length: 409)
Name: NF5262_low_10
Description: NF5262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5262_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 3 - 386
Target Start/End: Original strand, 45152852 - 45153248
Alignment:
| Q |
3 |
tgttaacagatcctatctagtttgtttgagacagaaataaataacagaggggtctttggtttaaaaggggaatgc---------------atttagattt |
87 |
Q |
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|||||| ||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
45152852 |
tgttaatagaccctatctagttagtttgagacagaaataaataacagaggggtgtttggtttaaaaggggaatgttgtgggtctgtatgtatttagattt |
45152951 |
T |
|
| Q |
88 |
tctcatcttcgtcttgtatctttctaatactgagttagtgattggggtttcttaaatgaaataacttttatttcagtcaattctgattgagttctattct |
187 |
Q |
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||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45152952 |
cctcatcttcgtcttgtatctttctaatactgagctagcgactggggtttcttaaatgaaatatcttttatttcagtcaattctgattgagttctattct |
45153051 |
T |
|
| Q |
188 |
atcatagtatcacttccctccttgtcataatttcagcatataagtatagactgcatgcctgccatttatttccatgcatttggcttttatctttatattt |
287 |
Q |
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||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
45153052 |
atcatagtatcactttcctcctcgtcataatttcagcttataagtatagactgcatgcctgccatttatttccatgcaattggcttttgtctttatattt |
45153151 |
T |
|
| Q |
288 |
gacatgtatacataatgca-gcaagaagttcaattgctatgaataatttcatgtgtgttgtttaatcacttagctttatttctctcaagggtttcaaata |
386 |
Q |
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||||||||||||||||||| ||||||||||||||||| | |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45153152 |
gacatgtatacataatgcaggcaagaagttcaattgcgaagaataatttc---tgtgttgttcaatcacttagctttatttctctcaagggtttcaaata |
45153248 |
T |
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