View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5262_low_11 (Length: 409)
Name: NF5262_low_11
Description: NF5262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5262_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 399
Target Start/End: Complemental strand, 23626144 - 23625763
Alignment:
| Q |
19 |
ttgtcctcaacaaattgagatattctataccattcaaataaacttcaagaataacgctctcaatggtcctcacgtatagaacatgtgccaaaagtgttag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23626144 |
ttgtcctcaacaaattgagatattctataccattcaaataaacttcaagaataacgctctcaatggtcctcacgtatagaacatgtgccaaaagtgttag |
23626045 |
T |
|
| Q |
119 |
atttgttgatatatattctttatggaattaagtgtttccatgaagctagataatctcattacagggtggtgcatccttgtggctctgcatatgttggtat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23626044 |
atttgttgatatatattctttatggaattaagtgtatccatgaagctagataatctcattacagggtggtgcatccttgtggctctgcatatgttggtat |
23625945 |
T |
|
| Q |
219 |
ctattctgatcg-nnnnnnngataaatttcagtataagcctgcatattgaatgtgacaatttgtcaagaacaagtgatttatatatacttttcaggaaag |
317 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23625944 |
ctattctgatcgaaaaaaaagataaatttcagtataagcctgcatattgaatgtgacaatttgtcaagaacaagtgatttatatatacttttcaggaaag |
23625845 |
T |
|
| Q |
318 |
cggtcaagttaagaatcctnnnnnnntgattggcaatccaatcttaatggaatatatttgaagcacaatataaactcctatg |
399 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23625844 |
cggtcaagttaagaatcctaaaaaaatgattggcaatccaatcttaatggaatatatttgaagcacaatataaactcctatg |
23625763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 399
Target Start/End: Complemental strand, 23615367 - 23614985
Alignment:
| Q |
19 |
ttgtcctcaacaaattgagatattctataccattcaaataaacttcaagaataacgctctcaatggtcctcacgtatagaacatgtgccaaaagtgttag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||| |
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|
| T |
23615367 |
ttgtcctcaacaaattgagatattctataccgttcaaataaacttcaagaataacactcttaatggtcctcacgtatagaacatctgccaaaagtgttac |
23615268 |
T |
|
| Q |
119 |
atttgttgatatatattctttatggaattaagtgtttccatgaagctagataatctcattacagggtggtgcatccttgtggctctgcatatgttggtat |
218 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || | |||| |
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|
| T |
23615267 |
atttgttaatatatattctttatggaattaagtgtttccatgaagctagataatctcattgcagggtggtgcatccttgtggctctgcatctgctagtat |
23615168 |
T |
|
| Q |
219 |
ctattctgat-cgnnnnnnngataaatttcagtataagcctgcata------ttgaatgtgacaatttgtcaagaacaagtgatttatatatacttttca |
311 |
Q |
| |
|
|||||||||| | || |||||||||||||||||| |||| |||||||||||| |||||||||||||||||| | | ||||||||||| |
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| T |
23615167 |
ctattctgatcccaaaaaaagaaaaatttcagtataagcctacatattgaatttgaatgtgacattttgtcaagaacaagtga--tctttatacttttca |
23615070 |
T |
|
| Q |
312 |
ggaaagcggtcaagttaagaatcctnnnnnnntgattggcaatccaatcttaatggaatatatttgaagcacaatataaactcctatg |
399 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
23615069 |
ggaaagcggtcaagttaagaatccaaaaaaaatgattgg---tccaatcttaatcgaatatatttgaagcacaatataaactcctatg |
23614985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 21 - 399
Target Start/End: Complemental strand, 23607981 - 23607605
Alignment:
| Q |
21 |
gtcctcaacaaattgagatattctataccattcaaataaacttcaagaataacgctctcaatggtcctcacgtatagaacatgtgccaaaagtgttagat |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||||| | |||||||||||| |||||||||||| |||||| ||| ||||| |
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|
| T |
23607981 |
gtcctcaacaaattgagatattctataccattcaaataaccatcaagaataatatt-tcaatggtcctcgcgtatagaacatctgccaatagtaatagat |
23607883 |
T |
|
| Q |
121 |
ttgttgatatatattctttatggaattaagtgtttccatgaagctagataatctcattacagggtggtgcatccttgtggctctgcatatgttggtatct |
220 |
Q |
| |
|
|| |||| || |||||||||| || |||||||||||||||||||| |||||||||| || ||||||||| |||||||||||||||| || |||||||| |
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|
| T |
23607882 |
ttattgacatctattctttatagatcgaagtgtttccatgaagctaggtaatctcatttcatggtggtgcagccttgtggctctgcatctgctggtatct |
23607783 |
T |
|
| Q |
221 |
attctgatcgnnnnnnngataaatttcagtataagcctgcatattgaatgtgacaatttgtcaagaacaagtgatttatatatacttttcaggaaagcgg |
320 |
Q |
| |
|
|||| ||||| | |||||| || |||||||| |||||||||||||||| |||||| |||||||||| | |||||||||||||||||||||| |
|
|
| T |
23607782 |
attccgatcggaaaaaatacaaattttaggataagcctacatattgaatgtgacattttgtccggaacaagtga--tctatatacttttcaggaaagcgg |
23607685 |
T |
|
| Q |
321 |
tcaagttaagaatcctnnnnnnntgattgg-caatccaatcttaatggaatatatttgaagcacaatataaactcctatg |
399 |
Q |
| |
|
|||||||||||||| | ||||||| || |||||| |||| ||||||||||||||||||||||||||||||||| |
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|
| T |
23607684 |
tcaagttaagaatcttaaaaaaatgattggtaaaaccaatcataatcgaatatatttgaagcacaatataaactcctatg |
23607605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 19 - 399
Target Start/End: Complemental strand, 23579185 - 23578805
Alignment:
| Q |
19 |
ttgtcctcaacaaattgagatattctataccattcaaataaacttcaag-aataacgctctcaatggtcctcacgtatagaacatgtgccaaaagtgtta |
117 |
Q |
| |
|
||||||||||| ||| ||||||||| |||||||||||||||||||||| || ||| ||||||||||| |||||||||||||||| | || ||||| ||| |
|
|
| T |
23579185 |
ttgtcctcaaccaataaagatattctctaccattcaaataaacttcaagaaagaacactctcaatggt-ctcacgtatagaacatcttcccaaagtctta |
23579087 |
T |
|
| Q |
118 |
ga-tttgttgatatatattctttatggaattaagtgtttccatgaagctagataatctcattacagggtggtgcatccttgtggctctgcatatgttggt |
216 |
Q |
| |
|
|| ||||||||||| | || |||||| | | ||||||| ||||||||| || |||||| || |||||||| | |||||||||||||||| | |||| |
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|
| T |
23579086 |
gattttgttgatatcttttatttatgaactaaagtgttcccatgaagccaggtaatctacttgcagggtggcg-tgccttgtggctctgcatctcctggt |
23578988 |
T |
|
| Q |
217 |
atctattctgatcgnnnnnnngataaatttcagtataagcctgcatattgaatgtg--acaatttgtcaagaacaagtgatttatatatacttttcagga |
314 |
Q |
| |
|
||||||||| || | || |||||| |||||||||||||||||||||| || || ||| |||||||||||||| | |||||||||||| ||| |
|
|
| T |
23578987 |
atctattctaattgaaaaaaagacaaattttagtataagcctgcatattgaatatgccacgttttatcaagaacaagtga--tctatatacttttctgga |
23578890 |
T |
|
| Q |
315 |
aagcggtcaagttaagaatcctnnnnnnntgattggcaatccaatcttaatggaatatatttgaagcacaatataaactcctatg |
399 |
Q |
| |
|
|||||||||||||||||||| | |||||| | ||||||| ||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
23578889 |
aagcggtcaagttaagaatcttgaaaaaatgattgcaaccccaatctaaatcgaatatatatgaagcacaatataaactcctatg |
23578805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 87 - 399
Target Start/End: Complemental strand, 23585353 - 23585049
Alignment:
| Q |
87 |
ctcacgtatagaacatgtgccaaaagtgttagatttgttgatatatattctttatggaattaagtgtttccatgaagctagataatctcattacagggtg |
186 |
Q |
| |
|
|||| ||||||||||| |||||||||| ||||||||||| |||| ||| ||||| | | | ||||||||||||||||||| |||||| | | | ||||| |
|
|
| T |
23585353 |
ctcatgtatagaacatctgccaaaagtattagatttgtttatatctatactttacgaattgaagtgtttccatgaagctaagtaatctaaatgctgggtg |
23585254 |
T |
|
| Q |
187 |
gtgcatccttgtggctctgcatatgttggtatctattctgatcgnnnnnnngataaatttcagtataagcctgcatattgaatgtgacaatttgtcaaga |
286 |
Q |
| |
|
|||| |||||||||||| ||| || | ||||||||||||||| || ||||| ||| ||||||||||||||| |||||||||| |
|
|
| T |
23585253 |
gtgctgccttgtggctctacatctgctagtatctattctgatctataaaaagacaaattgaagt----------atattgaatgtgacattttgtcaaga |
23585164 |
T |
|
| Q |
287 |
acaagtga--tttatatatacttttcaggaaagcggtcaagttaagaatcctnnnnnnntgattggcaatccaatcttaatggaatatatttgaagcaca |
384 |
Q |
| |
|
||| || | | ||||||||||||||| ||||| |||||||||||||||| |||||| | ||||||||||| |||||||| ||||||||| |
|
|
| T |
23585163 |
acaggtaatctatatatatacttttcaagaaagtggtcaagttaagaatctaaagaaaatgattgcaacaccaatcttaatcgaatatatatgaagcaca |
23585064 |
T |
|
| Q |
385 |
atataaactcctatg |
399 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
23585063 |
atataaattcctatg |
23585049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 243 - 399
Target Start/End: Complemental strand, 23620049 - 23619894
Alignment:
| Q |
243 |
atttcagtataagcctgcatattgaatgtgacaatttgtcaagaacaagtgatttatatatacttttcaggaaagcggtcaagttaagaatcctnnnnnn |
342 |
Q |
| |
|
|||| ||||||||||| |||||||| || |||| ||||| | ||||||||||| |||||| |||||||||||||| ||||||| ||||||| | |
|
|
| T |
23620049 |
attttagtataagcctacatattgattgagacattttgttaggaacaagtgatctatata--cttttcaggaaagcagtcaagtgaagaatcttaaaaaa |
23619952 |
T |
|
| Q |
343 |
ntgattggcaat-ccaatcttaatggaatatatttgaagcacaatataaactcctatg |
399 |
Q |
| |
|
|||||| ||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23619951 |
atgattgccaaaaccaatcataatggaatatatttgaagcacaatataaactcctatg |
23619894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 23620182 - 23620120
Alignment:
| Q |
68 |
aataacgctctcaatggtcctcacgtatagaacatgtgccaaaagtgttagatttgttgatat |
130 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
23620182 |
aataacactcttaatggtcctcacgtatagaacatctgccaaaagtattagatttgttgatat |
23620120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 23591034 - 23590947
Alignment:
| Q |
19 |
ttgtcctcaacaaattgagatattctatacca----ttcaaataaacttcaagaataacgctctcaatggtcctcacgtatagaacat |
102 |
Q |
| |
|
||||||| |||||||| | |||||||||||| ||||||| |||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
23591034 |
ttgtcctaaacaaatttatatattctatacctagctttcaaattcacttcaagaataacactctcaatggtcctcaagtatagaacat |
23590947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 23620218 - 23620178
Alignment:
| Q |
19 |
ttgtcctcaacaaattgagatattctataccattcaaataa |
59 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
23620218 |
ttgtcctcaacaaattgagatattctatgccgttcaaataa |
23620178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 23567356 - 23567266
Alignment:
| Q |
19 |
ttgtcctcaacaaattgagatattctatacca----ttcaaataaacttcaagaataa---cgctctcaatggtcctcacgtatagaacat |
102 |
Q |
| |
|
||||||| |||||||| |||||||||||||| ||||||| ||||||||| |||| | |||||||||||||||| ||||||||||| |
|
|
| T |
23567356 |
ttgtcctaaacaaattaagatattctatacctagctttcaaattaacttcaagcataattacactctcaatggtcctcaagtatagaacat |
23567266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 23620121 - 23620067
Alignment:
| Q |
176 |
attacagggtggtgcatccttgtggctctgcatatgttggtatctattctgatcg |
230 |
Q |
| |
|
|||||| ||||||||| | |||||||||||||| | |||||||||||||||||| |
|
|
| T |
23620121 |
attacatggtggtgcagctttgtggctctgcatctaatggtatctattctgatcg |
23620067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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