View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5262_low_14 (Length: 310)

Name: NF5262_low_14
Description: NF5262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5262_low_14
NF5262_low_14
[»] scaffold0127 (1 HSPs)
scaffold0127 (19-77)||(34181-34239)
[»] chr1 (6 HSPs)
chr1 (19-77)||(41386543-41386601)
chr1 (19-77)||(41398032-41398090)
chr1 (19-77)||(44024105-44024163)
chr1 (19-78)||(25445322-25445383)
chr1 (19-77)||(39445292-39445352)
chr1 (19-78)||(1055244-1055305)
[»] chr2 (5 HSPs)
chr2 (19-78)||(39812220-39812279)
chr2 (19-78)||(32246576-32246637)
chr2 (19-77)||(19344212-19344273)
chr2 (19-77)||(19349070-19349131)
chr2 (19-77)||(44312856-44312910)
[»] chr8 (3 HSPs)
chr8 (19-78)||(39785056-39785115)
chr8 (21-77)||(25328512-25328568)
chr8 (19-54)||(35745208-35745244)
[»] scaffold0355 (2 HSPs)
scaffold0355 (19-77)||(9872-9930)
scaffold0355 (19-76)||(113-170)
[»] chr7 (7 HSPs)
chr7 (19-77)||(31109815-31109872)
chr7 (19-77)||(24024560-24024618)
chr7 (19-80)||(19992101-19992165)
chr7 (19-56)||(21812471-21812508)
chr7 (19-77)||(4866528-4866582)
chr7 (19-77)||(12396710-12396764)
chr7 (19-55)||(12406149-12406184)
[»] chr6 (10 HSPs)
chr6 (19-77)||(28184297-28184355)
chr6 (19-77)||(14737809-14737866)
chr6 (19-77)||(14742668-14742725)
chr6 (197-251)||(8609016-8609070)
chr6 (19-77)||(11856765-11856824)
chr6 (19-77)||(28155803-28155861)
chr6 (19-77)||(6438294-6438353)
chr6 (19-54)||(6005234-6005270)
chr6 (19-77)||(22010929-22010983)
chr6 (19-54)||(33336176-33336212)
[»] chr4 (7 HSPs)
chr4 (19-78)||(3813815-3813876)
chr4 (36-77)||(5732458-5732499)
chr4 (19-77)||(45348050-45348109)
chr4 (19-77)||(45357529-45357588)
chr4 (19-77)||(18855519-18855579)
chr4 (19-77)||(9224639-9224698)
chr4 (19-77)||(9229426-9229484)
[»] chr5 (3 HSPs)
chr5 (34-77)||(15044484-15044527)
chr5 (19-77)||(28807807-28807868)
chr5 (19-54)||(2785192-2785228)
[»] chr3 (5 HSPs)
chr3 (36-77)||(18656228-18656269)
chr3 (19-77)||(22173427-22173484)
chr3 (19-56)||(2673164-2673202)
chr3 (19-56)||(2677320-2677358)
chr3 (19-54)||(10207750-10207786)
[»] scaffold0464 (1 HSPs)
scaffold0464 (19-77)||(155-215)
[»] scaffold0479 (1 HSPs)
scaffold0479 (19-77)||(13141-13201)
[»] scaffold0135 (1 HSPs)
scaffold0135 (19-77)||(35294-35352)


Alignment Details
Target: scaffold0127 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 34181 - 34239
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttctttggaaccggattcacaaca 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34181 cacacatcattggtttatttcattggtgtgaaggtttctttggaaccggattcacaaca 34239  T

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Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 41386601 - 41386543
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttctttggaaccggattcacaaca 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41386601 cacacatcattggtttatttcattggtgtgaaggtttctttggaaccggattcacaaca 41386543  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 41398090 - 41398032
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttctttggaaccggattcacaaca 77  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41398090 cacacataattggtttatttcattggtgtgaaggtttctttggaaccggattcacaaca 41398032  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 44024105 - 44024163
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttctttggaaccggattcacaaca 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  44024105 cacacatcattggtttatttcattggtgtgaaggtttatttggaatcggattcacaaca 44024163  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 25445322 - 25445383
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttctttg--gaaccggattcacaacac 78  Q
    ||||||||||||||||||||||||||||||||||||  ||||  ||||||||||||||||||    
T  25445322 cacacatcattggtttatttcattggtgtgaaggttcgtttgtagaaccggattcacaacac 25445383  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 39445352 - 39445292
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttctttg--gaaccggattcacaaca 77  Q
    ||||||||||||||||||||||||||||||||||||  ||||  |||||||||||||||||    
T  39445352 cacacatcattggtttatttcattggtgtgaaggttcgtttgtagaaccggattcacaaca 39445292  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 1055244 - 1055305
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttctttg--gaaccggattcacaacac 78  Q
    ||||||||||||||||||||||||||||||||||||   |||  ||||||||||||||||||    
T  1055244 cacacatcattggtttatttcattggtgtgaaggttcgattgtagaaccggattcacaacac 1055305  T

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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 39812220 - 39812279
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttctttggaaccggattcacaacac 78  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39812220 cacacatctttggtttatttcattggtgtgaaggtttctttggaaccggattcacaacac 39812279  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 32246637 - 32246576
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttctttg--gaaccggattcacaacac 78  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  32246637 cacacatcattggtttatttcattggtgtgaaggtttctttgtagaaccggattcacaacac 32246576  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 19344273 - 19344212
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttctt---tggaaccggattcacaaca 77  Q
    |||||||| ||||||||||||||||||||||||||||| |   | |||||||||||||||||    
T  19344273 cacacatctttggtttatttcattggtgtgaaggtttcattagttgaaccggattcacaaca 19344212  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 19349131 - 19349070
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttctt---tggaaccggattcacaaca 77  Q
    |||||||| ||||||||||||||||||||||||||||| |   | |||||||||||||||||    
T  19349131 cacacatctttggtttatttcattggtgtgaaggtttcattagttgaaccggattcacaaca 19349070  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 44312856 - 44312910
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttctttggaaccggattcacaaca 77  Q
    |||||||||||| |||||||||||||||||||| |   ||| |||||||||||||||||    
T  44312856 cacacatcattg-tttatttcattggtgtgaagat---ttttgaaccggattcacaaca 44312910  T

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Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 39785056 - 39785115
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttctttggaaccggattcacaacac 78  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39785056 cacacatctttggtttatttcattggtgtgaaggtttctttggaaccagattcacaacac 39785115  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 25328512 - 25328568
Alignment:
Q  21 cacatcattggtttatttcattggtgtgaaggtttctttggaaccggattcacaaca 77  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  25328512 cacatcattgatttatttcattgttgtgaaggtttctttggaaccggattcacaaca 25328568  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 35745244 - 35745208
Alignment:
Q  19 cacacatcattggtttatt-tcattggtgtgaaggtt 54  Q
    ||||||||||||||||||| |||||||||||||||||    
T  35745244 cacacatcattggtttattctcattggtgtgaaggtt 35745208  T

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Target: scaffold0355 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 9872 - 9930
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttctttggaaccggattcacaaca 77  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  9872 cacacatcattggtttatttcattggtgtgaaggtttgtttgaaaccggattcacaaca 9930  T

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Target: scaffold0355; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 113 - 170
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttctttggaaccggattcacaac 76  Q
    |||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||    
T  113 cacacatcattggtttatttaattggtgtgaaggtttgtttgaaaccggattcacaac 170  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 31109815 - 31109872
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttctttggaaccggattcacaaca 77  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31109815 cacacatcattg-tttatttcattggtgtgaaggtttctttggaaccggattcacaaca 31109872  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 24024560 - 24024618
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaagg-tttctttggaaccggattcacaaca 77  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  24024560 cacacatcattg-tttatttcattggtgtgaaggttttctttggaaccggattcacaaca 24024618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 19992165 - 19992101
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttctt---tggaaccggattcacaacacat 80  Q
    |||||||| ||||||||||||||||||||||||||| | |   | ||||||||||||||||||||    
T  19992165 cacacatctttggtttatttcattggtgtgaaggttccattagttgaaccggattcacaacacat 19992101  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 21812471 - 21812508
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttc 56  Q
    |||||||| |||||||||||||||||||||||||||||    
T  21812471 cacacatctttggtttatttcattggtgtgaaggtttc 21812508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 4866582 - 4866528
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttctttggaaccggattcacaaca 77  Q
    |||||||||||| ||||||||||||||||||||||   ||| |||||||||||||||||    
T  4866582 cacacatcattg-tttatttcattggtgtgaaggt---ttttgaaccggattcacaaca 4866528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 12396764 - 12396710
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttctttggaaccggattcacaaca 77  Q
    |||||||||||| ||||||||||||||||||||||   ||| |||||||||||||||||    
T  12396764 cacacatcattg-tttatttcattggtgtgaaggt---ttttgaaccggattcacaaca 12396710  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 12406184 - 12406149
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggttt 55  Q
    |||||||||||| ||||||||||||||||||||||||    
T  12406184 cacacatcattg-tttatttcattggtgtgaaggttt 12406149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 28184355 - 28184297
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttctttggaaccggattcacaaca 77  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  28184355 cacacatcattggtttatttcattggtgtgaaggtttgtttgaaaccggattcacaaca 28184297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 14737809 - 14737866
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttctttggaaccggattcacaaca 77  Q
    |||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||    
T  14737809 cacacatcattg-tttatttcattggtgtgaaggtttatttgaaaccggattcacaaca 14737866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 14742668 - 14742725
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttctttggaaccggattcacaaca 77  Q
    |||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||    
T  14742668 cacacatcattg-tttatttcattggtgtgaaggtttatttgaaaccggattcacaaca 14742725  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 8609016 - 8609070
Alignment:
Q  197 gttagggtttagaaattttgtttggaagaagaagattgtagtgtgagattcaaac 251  Q
    ||||||||| |||||||| | |||||||||||||||||| |||||||||||||||    
T  8609016 gttagggttaagaaatttagcttggaagaagaagattgtcgtgtgagattcaaac 8609070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 11856824 - 11856765
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaagg--tttctttggaaccggattcacaaca 77  Q
    |||||||||||| |||||||||||||||||||||  ||| ||| |||||||||||||||||    
T  11856824 cacacatcattg-tttatttcattggtgtgaaggttttttttttgaaccggattcacaaca 11856765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 28155803 - 28155861
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaagg-tttctttggaaccggattcacaaca 77  Q
    |||||||||||| |||||| |||||||||||||| ||| ||| |||||||||||||||||    
T  28155803 cacacatcattg-tttattgcattggtgtgaaggttttgtttagaaccggattcacaaca 28155861  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 6438353 - 6438294
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttctttg--gaaccggattcacaaca 77  Q
    |||||||||||| |||||||||||||||||||||||  ||||  |||||||| ||||||||    
T  6438353 cacacatcattg-tttatttcattggtgtgaaggttcgtttgtagaaccggaatcacaaca 6438294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 6005270 - 6005234
Alignment:
Q  19 cacacatcattggtttatt-tcattggtgtgaaggtt 54  Q
    ||||||||||||||||||| |||||||||||||||||    
T  6005270 cacacatcattggtttattctcattggtgtgaaggtt 6005234  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 22010929 - 22010983
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttctttggaaccggattcacaaca 77  Q
    |||||||||||| |||||||||||||||||||| |   ||| |||||||||||||||||    
T  22010929 cacacatcattg-tttatttcattggtgtgaagat---ttttgaaccggattcacaaca 22010983  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 33336176 - 33336212
Alignment:
Q  19 cacacatcattggtttatt-tcattggtgtgaaggtt 54  Q
    ||||||||||||||||||| |||||||||||||||||    
T  33336176 cacacatcattggtttattctcattggtgtgaaggtt 33336212  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 3813876 - 3813815
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttctttg--gaaccggattcacaacac 78  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  3813876 cacacatcattggtttatttcattggtgtgaaggtttctttgtagaaccggattcacaacac 3813815  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 5732499 - 5732458
Alignment:
Q  36 tttcattggtgtgaaggtttctttggaaccggattcacaaca 77  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  5732499 tttcattggtgtgaaggtttctttggaaccggattcacaaca 5732458  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 45348050 - 45348109
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttctttg--gaaccggattcacaaca 77  Q
    |||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||    
T  45348050 cacacatcattg-tttatttcattggtgtgaaggtttctttgtagaaccggattcacaaca 45348109  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 45357529 - 45357588
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttctttg--gaaccggattcacaaca 77  Q
    |||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||    
T  45357529 cacacatcattg-tttatttcattggtgtgaaggtttctttgtagaaccggattcacaaca 45357588  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 18855579 - 18855519
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttctttg--gaaccggattcacaaca 77  Q
    ||||||||||||||||||||||||||||||||||||   |||  |||||||||||||||||    
T  18855579 cacacatcattggtttatttcattggtgtgaaggttcgcttgtagaaccggattcacaaca 18855519  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 9224639 - 9224698
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaagg--tttctttggaaccggattcacaaca 77  Q
    |||||||||||| |||||||||||||||||||||  ||| ||| |||||||||||||||||    
T  9224639 cacacatcattg-tttatttcattggtgtgaaggttttttttttgaaccggattcacaaca 9224698  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 9229426 - 9229484
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaagg-tttctttggaaccggattcacaaca 77  Q
    |||||||||||| ||||||||||||||||||||| ||| |||  ||||||||||||||||    
T  9229426 cacacatcattg-tttatttcattggtgtgaaggttttttttttaaccggattcacaaca 9229484  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 15044527 - 15044484
Alignment:
Q  34 tatttcattggtgtgaaggtttctttggaaccggattcacaaca 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  15044527 tatttcattggtgtgaaggtttctttggaaccggattcacaaca 15044484  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 28807807 - 28807868
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttctt---tggaaccggattcacaaca 77  Q
    |||||||||||||||||||||||||||||||||||||| |   | |||||||||||||||||    
T  28807807 cacacatcattggtttatttcattggtgtgaaggtttcattagttgaaccggattcacaaca 28807868  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 2785228 - 2785192
Alignment:
Q  19 cacacatcattggtttatt-tcattggtgtgaaggtt 54  Q
    ||||||||||||||||||| |||||||||||||||||    
T  2785228 cacacatcattggtttattctcattggtgtgaaggtt 2785192  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 18656269 - 18656228
Alignment:
Q  36 tttcattggtgtgaaggtttctttggaaccggattcacaaca 77  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  18656269 tttcattggtgtgaaggtttctttggaaccggattcacaaca 18656228  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 22173427 - 22173484
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttctttggaaccggattcacaaca 77  Q
    |||||||||||| |||||||||||||||||||| ||| |||| ||||||||||||||||    
T  22173427 cacacatcattg-tttatttcattggtgtgaagatttgtttgaaaccggattcacaaca 22173484  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 2673164 - 2673202
Alignment:
Q  19 cacacatcattggtttatt-tcattggtgtgaaggtttc 56  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  2673164 cacacatcattggtttattctcattggtgtgaaggtttc 2673202  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 2677320 - 2677358
Alignment:
Q  19 cacacatcattggtttatt-tcattggtgtgaaggtttc 56  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  2677320 cacacatcattggtttattctcattggtgtgaaggtttc 2677358  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 10207786 - 10207750
Alignment:
Q  19 cacacatcattggtttatt-tcattggtgtgaaggtt 54  Q
    ||||||||||||||||||| |||||||||||||||||    
T  10207786 cacacatcattggtttattctcattggtgtgaaggtt 10207750  T

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Target: scaffold0464 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 215 - 155
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttctttg--gaaccggattcacaaca 77  Q
    |||||||| |||||||||||||||||||||||||||  ||||  |||||||||||||||||    
T  215 cacacatctttggtttatttcattggtgtgaaggttcgtttgtagaaccggattcacaaca 155  T

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Target: scaffold0479 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 13201 - 13141
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaaggtttctttg--gaaccggattcacaaca 77  Q
    |||| ||| |||||||||||||||||||||||||||  ||||  |||||||||||||||||    
T  13201 cacatatctttggtttatttcattggtgtgaaggttcgtttgtagaaccggattcacaaca 13141  T

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Target: scaffold0135 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 35294 - 35352
Alignment:
Q  19 cacacatcattggtttatttcattggtgtgaagg-tttctttggaaccggattcacaaca 77  Q
    |||||||||||| ||||||||||||||||||||| ||| |||  ||||||||||||||||    
T  35294 cacacatcattg-tttatttcattggtgtgaaggttttttttttaaccggattcacaaca 35352  T

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