View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5262_low_2 (Length: 620)

Name: NF5262_low_2
Description: NF5262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5262_low_2
NF5262_low_2
[»] chr5 (7 HSPs)
chr5 (153-620)||(5598948-5599394)
chr5 (51-86)||(5598846-5598881)
chr5 (551-616)||(33790742-33790807)
chr5 (524-618)||(34842012-34842110)
chr5 (537-616)||(31397587-31397668)
chr5 (552-616)||(27449250-27449314)
chr5 (552-616)||(37557219-37557283)
[»] chr8 (5 HSPs)
chr8 (552-618)||(26300766-26300832)
chr8 (551-616)||(35744817-35744882)
chr8 (552-618)||(18853756-18853822)
chr8 (552-616)||(5591557-5591621)
chr8 (552-616)||(10684859-10684923)
[»] chr3 (4 HSPs)
chr3 (433-507)||(24933231-24933305)
chr3 (537-616)||(32479751-32479832)
chr3 (551-616)||(32891762-32891827)
chr3 (552-616)||(22834440-22834504)
[»] chr7 (8 HSPs)
chr7 (551-618)||(5817778-5817845)
chr7 (537-616)||(16884338-16884419)
chr7 (552-618)||(18413086-18413152)
chr7 (551-616)||(7093935-7094000)
chr7 (551-616)||(48490077-48490142)
chr7 (560-616)||(3903913-3903969)
chr7 (552-616)||(12405765-12405829)
chr7 (552-616)||(24261918-24261982)
[»] scaffold0188 (1 HSPs)
scaffold0188 (552-618)||(18537-18603)
[»] chr2 (3 HSPs)
chr2 (551-616)||(19348704-19348769)
chr2 (552-618)||(23079060-23079126)
chr2 (552-618)||(25403078-25403144)
[»] chr6 (4 HSPs)
chr6 (552-616)||(33331041-33331105)
chr6 (537-616)||(12936707-12936788)
chr6 (551-616)||(30444033-30444098)
chr6 (552-616)||(14738167-14738231)
[»] scaffold0028 (1 HSPs)
scaffold0028 (537-616)||(149550-149631)
[»] scaffold0025 (1 HSPs)
scaffold0025 (551-616)||(72991-73056)
[»] scaffold0197 (1 HSPs)
scaffold0197 (552-616)||(14904-14968)
[»] chr4 (1 HSPs)
chr4 (552-616)||(9224999-9225063)
[»] chr1 (1 HSPs)
chr1 (552-616)||(41397667-41397731)


Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 153 - 620
Target Start/End: Original strand, 5598948 - 5599394
Alignment:
Q  153 tcatttatcttccaaccattacggtctcatatctgtgtgtgtggtttgcctcctcctctttggttggaaatggaatgactttgtctc--tctctcctaca 250  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||    
T  5598948 tcatttatcttccaaccactacggtctcatatctgtgtgtgtggtttgcctcctcctctttggttggaaatggaatgagtttgtctctctctctcctaca 5599047  T
Q  251 cgatcacacctaatcaccaatatcttatgacatcatgttccagccacaacccacaggcttctttgtggttgtaccaatccttttttgggtacaatgtacc 350  Q
    |||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5599048 cgatcacacctaatcaccaacagtttatgacatcatgttccagccacaacccacaggcttctttatggttgtaccaatccttttttgggtacaatgtacc 5599147  T
Q  351 agtccttttttattcgctttactccacctttttccattgacgattactccagcttaaattaaaggaaaatgaatctagtaacaacaaagccttgtctccc 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5599148 agtccttttttattcgctttactccacctttttccattgacgattactccagcttaaattaaaggaaaatgaatctagtaacaacaaagccttgtctccc 5599247  T
Q  451 tcttccactttcactttaatatttggtaagttatccataattttgttgaattccgtctcnnnnnnnnagtctctgataggtttagaccaccgtcttaaat 550  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          ||||| |||||||||||||||||| ||||||||    
T  5599248 tcttccactttcactttaatatttggtaagttatccataattttgttgaattccctc------aattagtctgtgataggtttagaccaccatcttaaat 5599341  T
Q  551 gtagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaacttagtc 620  Q
                     |||||||||| ||||||||||||||||||||| | ||||||||||||||||||    
T  5599342 -----------------aaaattgtctctgagtcaaagattttatcatatataatgactccaacttagtc 5599394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 51 - 86
Target Start/End: Original strand, 5598846 - 5598881
Alignment:
Q  51 atataattttctctttattaacatctattgcgtgcc 86  Q
    ||||||||||||||||||||||||||||||||||||    
T  5598846 atataattttctctttattaacatctattgcgtgcc 5598881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 551 - 616
Target Start/End: Original strand, 33790742 - 33790807
Alignment:
Q  551 gtagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaactt 616  Q
    |||||||||||| || || | ||||||||||| |||||||||  ||||| ||||||||||||||||    
T  33790742 gtagagttgttgcttcaagagttgtctatgagccaaagatttcgtcatatacaatgactccaactt 33790807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 524 - 618
Target Start/End: Original strand, 34842012 - 34842110
Alignment:
Q  524 tgataggtttagac--caccgtcttaaatg--tagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaacttag 618  Q
    ||||||||||||||  |||| |||| ||||  |||||||||| ||| |||||||||||| |||  ||||||||| ||||  |||||| |||||||||||    
T  34842012 tgataggtttagactccaccatcttgaatgagtagagttgttatttcaaaaattgtctacgagctaaagattttgtcatgtacaatggctccaacttag 34842110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 537 - 616
Target Start/End: Complemental strand, 31397668 - 31397587
Alignment:
Q  537 ccaccgtcttaaatg--tagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaactt 616  Q
    ||||| |||||||||  ||||||||||| || || | ||| ||||||| |||||||||| ||||| | ||||||||||||||    
T  31397668 ccaccatcttaaatgaatagagttgttgcttcaagagttgcctatgagccaaagattttgtcatatagaatgactccaactt 31397587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 552 - 616
Target Start/End: Original strand, 27449250 - 27449314
Alignment:
Q  552 tagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaactt 616  Q
    ||||||||||| || || | ||| |||||||  ||||||||| ||||| ||||||||||||||||    
T  27449250 tagagttgttgcttcaagagttgcctatgagctaaagattttgtcatatacaatgactccaactt 27449314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 552 - 616
Target Start/End: Complemental strand, 37557283 - 37557219
Alignment:
Q  552 tagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaactt 616  Q
    ||||||||||| || || | ||| ||||||| |||||||||  ||||| ||||||||||||||||    
T  37557283 tagagttgttgcttcaagagttgcctatgagccaaagatttcgtcatatacaatgactccaactt 37557219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 552 - 618
Target Start/End: Original strand, 26300766 - 26300832
Alignment:
Q  552 tagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaacttag 618  Q
    |||||||||||||| || | ||||||||||| |||||||||| ||||  ||||||||||||||||||    
T  26300766 tagagttgttgtttcaagagttgtctatgagccaaagattttgtcatgtacaatgactccaacttag 26300832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 551 - 616
Target Start/End: Original strand, 35744817 - 35744882
Alignment:
Q  551 gtagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaactt 616  Q
    |||||||||||| || || | ||||||||||| |||||||||  ||||| ||||||||||||||||    
T  35744817 gtagagttgttgcttcaagagttgtctatgagccaaagatttcgtcatatacaatgactccaactt 35744882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 552 - 618
Target Start/End: Complemental strand, 18853822 - 18853756
Alignment:
Q  552 tagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaacttag 618  Q
    |||||||||||||| || | ||| ||||||| |||||||||  ||||| ||||||||||||| ||||    
T  18853822 tagagttgttgtttcaagagttgcctatgagccaaagatttcgtcatatacaatgactccaatttag 18853756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 552 - 616
Target Start/End: Complemental strand, 5591621 - 5591557
Alignment:
Q  552 tagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaactt 616  Q
    ||||||||||| || |  ||||| ||||||| |||||| || |||||| ||||||||||||||||    
T  5591621 tagagttgttgcttaaggaattgcctatgagccaaagacttgatcatatacaatgactccaactt 5591557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 552 - 616
Target Start/End: Complemental strand, 10684923 - 10684859
Alignment:
Q  552 tagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaactt 616  Q
    ||||||||||| || || | ||| ||||||| |||||||||  ||||| ||||||||||||||||    
T  10684923 tagagttgttgcttcaagagttgcctatgagccaaagatttcgtcatatacaatgactccaactt 10684859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 433 - 507
Target Start/End: Complemental strand, 24933305 - 24933231
Alignment:
Q  433 aacaaagccttgtctccctcttccactttcactttaatatttggtaagttatccataattttgttgaattccgtc 507  Q
    ||||||||||||||| | |||||||||||||||| |||||||| ||||| ||| | ||| |||||||||| ||||    
T  24933305 aacaaagccttgtcttcgtcttccactttcacttcaatatttgctaagtcatcaagaatcttgttgaattacgtc 24933231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 537 - 616
Target Start/End: Original strand, 32479751 - 32479832
Alignment:
Q  537 ccaccgtcttaaatg--tagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaactt 616  Q
    ||||| |||||||||  ||||||||||| || || | ||| ||||||| |||||||||  ||||| ||||||||||||||||    
T  32479751 ccaccatcttaaatgaatagagttgttgcttcaagagttgcctatgagccaaagatttcgtcatatacaatgactccaactt 32479832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 616
Target Start/End: Complemental strand, 32891827 - 32891762
Alignment:
Q  551 gtagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaactt 616  Q
    |||||||||||| || |  ||||| ||||||| |||||||||  ||||| ||||||||||||||||    
T  32891827 gtagagttgttgcttaaggaattgcctatgagccaaagatttggtcatatacaatgactccaactt 32891762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 552 - 616
Target Start/End: Original strand, 22834440 - 22834504
Alignment:
Q  552 tagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaactt 616  Q
    ||||||||||| || |  ||||| ||||||| |||||| || |||||| ||||||||||||||||    
T  22834440 tagagttgttgcttaaggaattgcctatgagccaaagacttgatcatatacaatgactccaactt 22834504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 551 - 618
Target Start/End: Complemental strand, 5817845 - 5817778
Alignment:
Q  551 gtagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaacttag 618  Q
    ||||||||||||||| || | ||  ||||||||||| |||||| ||||| ||||||||||||||||||    
T  5817845 gtagagttgttgtttcaagagtttcctatgagtcaacgattttgtcatatacaatgactccaacttag 5817778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 537 - 616
Target Start/End: Original strand, 16884338 - 16884419
Alignment:
Q  537 ccaccgtcttaaatg--tagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaactt 616  Q
    ||||| |||||||||  ||||||||||| || || | ||| ||||||| |||||||||  ||||| ||||||||||||||||    
T  16884338 ccaccatcttaaatgaatagagttgttgcttcaagagttgcctatgagccaaagatttcgtcatatacaatgactccaactt 16884419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 552 - 618
Target Start/End: Original strand, 18413086 - 18413152
Alignment:
Q  552 tagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaacttag 618  Q
    |||||||||||||| || | ||| ||||||| |||||||||  ||||  ||||||||||||||||||    
T  18413086 tagagttgttgtttcaagagttgcctatgagccaaagatttcgtcatgtacaatgactccaacttag 18413152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 616
Target Start/End: Original strand, 7093935 - 7094000
Alignment:
Q  551 gtagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaactt 616  Q
    |||||||||||| ||||  ||||||| ||||| |||||| ||| ||||| |||| |||||||||||    
T  7093935 gtagagttgttgctttaggaattgtcgatgagccaaagactttgtcatatacaaagactccaactt 7094000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 616
Target Start/End: Complemental strand, 48490142 - 48490077
Alignment:
Q  551 gtagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaactt 616  Q
    |||||||||||| || |  ||||| ||||||| |||||||||| | ||| ||||||||||||||||    
T  48490142 gtagagttgttgcttaaggaattgcctatgagccaaagattttgtaatatacaatgactccaactt 48490077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 616
Target Start/End: Original strand, 3903913 - 3903969
Alignment:
Q  560 ttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaactt 616  Q
    ||||||||  ||||||||| |||||||||| ||  ||||| ||||||||||||||||    
T  3903913 ttgttttaggaattgtctaggagtcaaagacttggtcatatacaatgactccaactt 3903969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 552 - 616
Target Start/End: Original strand, 12405765 - 12405829
Alignment:
Q  552 tagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaactt 616  Q
    ||||||||||| || || | ||| ||||||| |||||||||  ||||| ||||||||||||||||    
T  12405765 tagagttgttgcttcaagagttgcctatgagccaaagatttcgtcatatacaatgactccaactt 12405829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 552 - 616
Target Start/End: Complemental strand, 24261982 - 24261918
Alignment:
Q  552 tagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaactt 616  Q
    ||||||||||| || || | ||| ||||||| |||||||||  ||||| ||||||||||||||||    
T  24261982 tagagttgttgcttcaagagttgcctatgagccaaagatttcgtcatatacaatgactccaactt 24261918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 552 - 618
Target Start/End: Complemental strand, 18603 - 18537
Alignment:
Q  552 tagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaacttag 618  Q
    |||||||||||||| |||| ||| ||||||| |||||||||  ||||  ||||||||||||||||||    
T  18603 tagagttgttgtttcaaaagttgcctatgagccaaagatttcgtcatgtacaatgactccaacttag 18537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 551 - 616
Target Start/End: Original strand, 19348704 - 19348769
Alignment:
Q  551 gtagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaactt 616  Q
    |||||||||||| || || | ||||||||||| |||||||||  ||||| ||||||||||||||||    
T  19348704 gtagagttgttgcttcaagagttgtctatgagccaaagatttcgtcatatacaatgactccaactt 19348769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 552 - 618
Target Start/End: Complemental strand, 23079126 - 23079060
Alignment:
Q  552 tagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaacttag 618  Q
    |||||||||||||| || | ||| ||||||| |||||||||  ||||  ||||||||||||||||||    
T  23079126 tagagttgttgtttcaagagttgcctatgagccaaagatttcgtcatgtacaatgactccaacttag 23079060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 552 - 618
Target Start/End: Original strand, 25403078 - 25403144
Alignment:
Q  552 tagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaacttag 618  Q
    |||||||||||||| || | ||| ||||||| |||||||||  ||||  ||||||||||||||||||    
T  25403078 tagagttgttgtttcaagagttgcctatgagccaaagatttcgtcatgtacaatgactccaacttag 25403144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 552 - 616
Target Start/End: Complemental strand, 33331105 - 33331041
Alignment:
Q  552 tagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaactt 616  Q
    ||||||||||| || || | ||| ||||||| ||||||||| |||||| ||||||||||||||||    
T  33331105 tagagttgttgcttcaagagttgcctatgagccaaagatttcatcatatacaatgactccaactt 33331041  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 537 - 616
Target Start/End: Original strand, 12936707 - 12936788
Alignment:
Q  537 ccaccgtcttaaatg--tagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaactt 616  Q
    ||||| |||||||||  ||||||||||| ||||  ||||| | ||||| |||||||||| ||||| |||| |||||||||||    
T  12936707 ccaccatcttaaatgagtagagttgttgctttaggaattgccaatgagccaaagattttgtcatatacaaagactccaactt 12936788  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 616
Target Start/End: Complemental strand, 30444098 - 30444033
Alignment:
Q  551 gtagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaactt 616  Q
    |||||||||| | |||| |||||||||||||| |||||| ||  ||||| |||| |||||||||||    
T  30444098 gtagagttgtggctttagaaattgtctatgagccaaagacttggtcatatacaacgactccaactt 30444033  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 552 - 616
Target Start/End: Complemental strand, 14738231 - 14738167
Alignment:
Q  552 tagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaactt 616  Q
    ||||||||||| || || | ||| ||||||| |||||||||  ||||| ||||||||||||||||    
T  14738231 tagagttgttgcttcaagagttgcctatgagccaaagatttcgtcatatacaatgactccaactt 14738167  T

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Target: scaffold0028 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 537 - 616
Target Start/End: Complemental strand, 149631 - 149550
Alignment:
Q  537 ccaccgtcttaaatg--tagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaactt 616  Q
    ||||| |||||||||  ||||||||||| || || | ||| ||||||| |||||||||  ||||| ||||||||||||||||    
T  149631 ccaccatcttaaatgaatagagttgttgcttcaagagttgcctatgagccaaagatttcgtcatatacaatgactccaactt 149550  T

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Target: scaffold0025 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 616
Target Start/End: Original strand, 72991 - 73056
Alignment:
Q  551 gtagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaactt 616  Q
    |||||||||||| ||||  ||||| | |||||||||||||||| ||||| |||| || ||||||||    
T  72991 gtagagttgttgctttaggaattgccgatgagtcaaagattttgtcatatacaaagattccaactt 73056  T

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Target: scaffold0197 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 552 - 616
Target Start/End: Complemental strand, 14968 - 14904
Alignment:
Q  552 tagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaactt 616  Q
    ||||||||||| || || | ||| ||||||| |||||||||  ||||| ||||||||||||||||    
T  14968 tagagttgttgcttcaagagttgcctatgagccaaagatttcgtcatatacaatgactccaactt 14904  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 552 - 616
Target Start/End: Complemental strand, 9225063 - 9224999
Alignment:
Q  552 tagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaactt 616  Q
    ||||||||||| || || | ||| ||||||| |||||||||  ||||| ||||||||||||||||    
T  9225063 tagagttgttgcttcaagagttgcctatgagccaaagatttcgtcatatacaatgactccaactt 9224999  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 552 - 616
Target Start/End: Original strand, 41397667 - 41397731
Alignment:
Q  552 tagagttgttgttttaaaaattgtctatgagtcaaagattttatcatacacaatgactccaactt 616  Q
    ||||||||||| || || | ||| ||||||| |||||||||  ||||| ||||||||||||||||    
T  41397667 tagagttgttgcttcaagagttgcctatgagccaaagatttcgtcatatacaatgactccaactt 41397731  T

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