View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5262_low_23 (Length: 228)
Name: NF5262_low_23
Description: NF5262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5262_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 47184509 - 47184284
Alignment:
| Q |
1 |
ttatgcatggttatcttatgattatgattaattgatggtgtaaaaactctttaaactaataatatatatgaataagcaaatcat---ttcaatatataat |
97 |
Q |
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| T |
47184509 |
ttatgcatggttatcttatgattatgattaattgatggtgtaaaaactctttaaactaataatatatttgaataagcaaatcatcatttcaatatataat |
47184410 |
T |
|
| Q |
98 |
gacctgattggcgaaaccaacaccacaaccaagtatgattctgccaagaatgatgaggctaagggtgcctgctaaagcacttaaggcagtgccagcaatg |
197 |
Q |
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| T |
47184409 |
gacctgattggcgaaaccaacaccacaaccaagtatgattctgccaagaatgatgaggctaagggtgcctgctaaagcacttaaggcagtgccagcaatg |
47184310 |
T |
|
| Q |
198 |
aagaaaattccagcaagcaacatagt |
223 |
Q |
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|||||||||||||||||||||||||| |
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| T |
47184309 |
aagaaaattccagcaagcaacatagt |
47184284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 89 - 223
Target Start/End: Complemental strand, 47197455 - 47197321
Alignment:
| Q |
89 |
atatataatgacctgattggcgaaaccaacaccacaaccaagtatgattctgccaagaatgatgaggctaagggtgcctgctaaagcacttaaggcagtg |
188 |
Q |
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| T |
47197455 |
atatataaggacctggttggcaaaaccaactccgcaaccaagtaagattctgccaaaaatgaggaggataagtttccctgctgaggcacttaagacagtg |
47197356 |
T |
|
| Q |
189 |
ccagcaatgaagaaaattccagcaagcaacatagt |
223 |
Q |
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| T |
47197355 |
ccaacaatgaacaaaattccagcaagcaacatagt |
47197321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 750847 - 750898
Alignment:
| Q |
99 |
acctgattggcgaaaccaacaccacaaccaagtatgattctgccaagaatga |
150 |
Q |
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| T |
750847 |
acctgattagcaaaaccaacaccacaaccaagtaagattctgccaacaatga |
750898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 33548015 - 33548060
Alignment:
| Q |
28 |
ttaattgatggtgtaaaaactctttaaactaataatatatatgaat |
73 |
Q |
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| T |
33548015 |
ttaattgatggtgtaaaaactctttatactaatggtgtatatgaat |
33548060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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