View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5262_low_25 (Length: 224)

Name: NF5262_low_25
Description: NF5262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5262_low_25
NF5262_low_25
[»] chr5 (2 HSPs)
chr5 (1-162)||(13990459-13990620)
chr5 (159-204)||(13990899-13990944)
[»] chr4 (1 HSPs)
chr4 (159-199)||(38940650-38940690)
[»] chr7 (2 HSPs)
chr7 (159-200)||(5468078-5468119)
chr7 (159-199)||(32676398-32676438)
[»] chr2 (3 HSPs)
chr2 (154-199)||(9740327-9740373)
chr2 (159-189)||(33228199-33228229)
chr2 (159-200)||(38799395-38799436)


Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 13990459 - 13990620
Alignment:
Q  1 agtgggggcaagaagggacatttttcacagggctcaacttttttatcctaaatatcttgcatgcatgtatgtcaaatttcaattttatttatagatttta 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13990459 agtgggggcaagaagggacatttttcacacggctcaacttttttatcctaaatatcttgcatgcatgtaagtcaaatttcaattttatttatagatttta 13990558  T
Q  101 aaatttgtctcttaacaataatatataaaagattttgggttgactttttcattctcttaata 162  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13990559 aaatttgtctcttaacaataatatataaaagattttgggttgacattttcattctcttaata 13990620  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 13990899 - 13990944
Alignment:
Q  159 aataaatttgtctataaaaatgttatattattgatgtcattgctat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  13990899 aataaatttgtctataaaaatgttatattattgatgtcattgctat 13990944  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 38940690 - 38940650
Alignment:
Q  159 aataaatttgtctataaaaatgttatattattgatgtcatt 199  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  38940690 aataaatttgtctataaaaatgttatattattgatgtcatt 38940650  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 5468078 - 5468119
Alignment:
Q  159 aataaatttgtctataaaaatgttatattattgatgtcattg 200  Q
    ||||||||| ||||||| ||||||||||||||||||||||||    
T  5468078 aataaatttttctataataatgttatattattgatgtcattg 5468119  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 32676398 - 32676438
Alignment:
Q  159 aataaatttgtctataaaaatgttatattattgatgtcatt 199  Q
    |||||| |||||| ||| |||||||||||||||||||||||    
T  32676398 aataaagttgtctctaagaatgttatattattgatgtcatt 32676438  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 9740373 - 9740327
Alignment:
Q  154 ctcttaat-aaatttgtctataaaaatgttatattattgatgtcatt 199  Q
    |||||||| ||||||||||||||||||||| |||| |||||||||||    
T  9740373 ctcttaatcaaatttgtctataaaaatgttgtattcttgatgtcatt 9740327  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 189
Target Start/End: Original strand, 33228199 - 33228229
Alignment:
Q  159 aataaatttgtctataaaaatgttatattat 189  Q
    |||||||||||||||||||||||||||||||    
T  33228199 aataaatttgtctataaaaatgttatattat 33228229  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 38799395 - 38799436
Alignment:
Q  159 aataaatttgtctataaaaatgttatattattgatgtcattg 200  Q
    |||||||||||||||||||||||| |||||||  ||||||||    
T  38799395 aataaatttgtctataaaaatgttttattattagtgtcattg 38799436  T

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