View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5262_low_26 (Length: 221)

Name: NF5262_low_26
Description: NF5262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5262_low_26
NF5262_low_26
[»] chr4 (2 HSPs)
chr4 (1-214)||(46219007-46219221)
chr4 (107-162)||(18991880-18991935)
[»] chr6 (4 HSPs)
chr6 (1-214)||(9312920-9313134)
chr6 (12-159)||(2683616-2683763)
chr6 (25-214)||(14676152-14676342)
chr6 (59-162)||(32159939-32160042)
[»] chr1 (1 HSPs)
chr1 (25-214)||(46781482-46781672)
[»] chr5 (2 HSPs)
chr5 (62-214)||(35077244-35077397)
chr5 (44-162)||(39365911-39366029)
[»] chr2 (3 HSPs)
chr2 (25-214)||(37599193-37599383)
chr2 (14-214)||(24220958-24221159)
chr2 (69-163)||(32487550-32487644)
[»] chr7 (3 HSPs)
chr7 (68-161)||(23761648-23761741)
chr7 (25-214)||(13064002-13064192)
chr7 (25-214)||(44362276-44362466)
[»] chr8 (1 HSPs)
chr8 (25-214)||(20129605-20129795)


Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 46219007 - 46219221
Alignment:
Q  1 ttgtgtgtcgagatgtgggaattgggaaacagcagcacatttatttttatcttgtgacatatttagctctctttggtcccatgtttagctctggttgggt 100  Q
    ||||||||| ||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46219007 ttgtgtgtcaagatgtgggaatttggaaacaacagcacatttatttttagcttgtgacatatttagctctctttggtcccatgtttagctctggttgggt 46219106  T
Q  101 attgattcggtatcttcaggtgatcttcgtcaacatttcattcaatttactaatatggcgggactactta-atcaactcatctgtacttcagaatgattt 199  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||| ||||    
T  46219107 attgatttggtatcttcaggtgatcttcgtcaacatttcattcagtttactaatatggcgggactgcttagatcaactcatctgtacttcagaatcattt 46219206  T
Q  200 ggtttgcctatgttt 214  Q
    |||||||||||||||    
T  46219207 ggtttgcctatgttt 46219221  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 162
Target Start/End: Original strand, 18991880 - 18991935
Alignment:
Q  107 tcggtatcttcaggtgatcttcgtcaacatttcattcaatttactaatatggcggg 162  Q
    |||||| |||| ||||||||||| |||||||| ||||| ||||| |||||||||||    
T  18991880 tcggtaccttctggtgatcttcgacaacattttattcagtttaccaatatggcggg 18991935  T

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Target: chr6 (Bit Score: 111; Significance: 3e-56; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 9312920 - 9313134
Alignment:
Q  1 ttgtgtgtcgagatgtgggaattgggaaacagcagcacatttatttttatcttgtgacatatttagctctctttggtcccatgtttagctctggttgggt 100  Q
    |||||||||  |||| ||||||| ||||| | || ||||| | |||||| |||||||||| || |||||||||||||| ||||||| |||||||||||||    
T  9312920 ttgtgtgtcaggatgcgggaatttggaaaaaacatcacatatgtttttagcttgtgacattttcagctctctttggtctcatgtttggctctggttgggt 9313019  T
Q  101 attgattcggtatcttcaggtgatcttcgtcaacatttcattcaatttactaatatggcgggactactta-atcaactcatctgtacttcagaatgattt 199  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||  | | || |||||| ||| ||||||||||||| ||||    
T  9313020 attgattcggtctcttcaggtgatcttcgtcaacatttcattcagtttactaatatggcgggtttgcctagatcaacacatttgtacttcagaatcattt 9313119  T
Q  200 ggtttgcctatgttt 214  Q
    ||||||||| |||||    
T  9313120 ggtttgcctctgttt 9313134  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 2683616 - 2683763
Alignment:
Q  12 gatgtgggaattgggaaacagcagcacatttatttttatcttgtgacatatttagctctctttggtcccatgtttagctctggttgggtattgattcggt 111  Q
    ||||||| |||| ||||||| |||| ||||| ||||||  ||| ||||||||||||| |||||  |||||||||| ||||||||||||||||  ||| |     
T  2683616 gatgtggaaatttggaaacaacagctcatttgtttttagattgcgacatatttagctttctttcatcccatgtttggctctggttgggtatttcttccgc 2683715  T
Q  112 atcttcaggtgatcttcgtcaacatttcattcaatttactaatatggc 159  Q
     || ||| |||||||||||||||||||||||||  |||||||||||||    
T  2683716 ttcctcaagtgatcttcgtcaacatttcattcagcttactaatatggc 2683763  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 214
Target Start/End: Original strand, 14676152 - 14676342
Alignment:
Q  25 ggaaacagcagcacatttatttttatcttgtgacatatttagctctctttggtcccatgtttagctctggttgggtattgattcggtatcttcaggtgat 124  Q
    |||||||||| | || || ||| |||||||| |||| ||| | ||||||||||  ||||| | |   ||| ||||||||||||  ||  |||||||||||    
T  14676152 ggaaacagcatctcaattgtttgtatcttgtaacatttttggttctctttggtttcatgtatggtattggctgggtattgattttgttccttcaggtgat 14676251  T
Q  125 cttcgtcaacatttcattcaatttactaatatggcgggactactta-atcaactcatctgtacttcagaatgatttggtttgcctatgttt 214  Q
    |||||||||||||| ||||| |||||||| ||||||||  | | || |||||||||| |||| ||||| || |||| |||||||| |||||    
T  14676252 cttcgtcaacattttattcagtttactaagatggcggggttgcctagatcaactcatttgtatttcaggattattttgtttgcctctgttt 14676342  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 162
Target Start/End: Original strand, 32159939 - 32160042
Alignment:
Q  59 atatttagctctctttggtcccatgtttagctctggttgggtattgattcggtatcttcaggtgatcttcgtcaacatttcattcaatttactaatatgg 158  Q
    |||||||||||||| ||||| ||||| | || ||||||||||||   |||||| | ||| ||||| || || ||||| ||  |||||||||||||| |||    
T  32159939 atatttagctctctatggtctcatgtgtggcactggttgggtatctcttcggttttttctggtgacctccgacaacactttgttcaatttactaatttgg 32160038  T
Q  159 cggg 162  Q
    ||||    
T  32160039 cggg 32160042  T

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Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 25 - 214
Target Start/End: Original strand, 46781482 - 46781672
Alignment:
Q  25 ggaaacagcagcacatttatttttatcttgtgacatatttagctctctttggtcccatgtttagctctggttgggtattgattcggtatcttcaggtgat 124  Q
    ||||||| || | ||||| ||| |||||||| |||| ||||||||||||||||  ||||| | |   ||| ||||||||||||  ||  |||||||||||    
T  46781482 ggaaacaacatctcatttgtttgtatcttgtaacatttttagctctctttggtttcatgtatggtcttggctgggtattgattttgttccttcaggtgat 46781581  T
Q  125 cttcgtcaacatttcattcaatttactaatatggcgggactactta-atcaactcatctgtacttcagaatgatttggtttgcctatgttt 214  Q
    |||||||||||||| ||||| |||||||| ||||||||  | | || || ||||||| |||| ||||| || ||||||||||||| |||||    
T  46781582 cttcgtcaacattttattcagtttactaagatggcggggttgcatagataaactcatttgtatttcaggattatttggtttgcctctgttt 46781672  T

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Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 62 - 214
Target Start/End: Original strand, 35077244 - 35077397
Alignment:
Q  62 tttagctctctttggtcccatgtttagctctggttgggtattgattcggtatcttcaggtgatcttcgtcaacatttcattcaatttactaatatggcgg 161  Q
    ||||||||||||||||  ||||||| |   |||||||| ||| |||  ||| ||||||||||||||||||||||||| ||||| ||||| || |||||||    
T  35077244 tttagctctctttggtttcatgtttggtcttggttgggcattaattttgtaccttcaggtgatcttcgtcaacattttattcagtttacaaagatggcgg 35077343  T
Q  162 gactactta-atcaactcatctgtacttcagaatgatttggtttgcctatgttt 214  Q
    || | | || |||||||||| |||  ||||| || |||||||||||||||||||    
T  35077344 gaatgcctagatcaactcatttgtttttcaggattatttggtttgcctatgttt 35077397  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 44 - 162
Target Start/End: Original strand, 39365911 - 39366029
Alignment:
Q  44 tttttatcttgtgacatatttagctctctttggtcccatgtttagctctggttgggtattgattcggtatcttcaggtgatcttcgtcaacatttcattc 143  Q
    ||||||| ||||||||||||||||||||||||||  |||||   |   ||||||||||||||||  |||| |  |||||||||||| ||||||||||| |    
T  39365911 tttttattttgtgacatatttagctctctttggtatcatgtcaggacttggttgggtattgattttgtatatgtaggtgatcttcgccaacatttcatcc 39366010  T
Q  144 aatttactaatatggcggg 162  Q
    | ||||||||| |||||||    
T  39366011 actttactaatttggcggg 39366029  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 214
Target Start/End: Original strand, 37599193 - 37599383
Alignment:
Q  25 ggaaacagcagcacatttatttttatcttgtgacatatttagctctctttggtcccatgtttagctctggttgggtattgattcggtatcttcaggtgat 124  Q
    ||||||| || | ||||| ||| |||||||| |||| ||||||||||||||||  ||||| | |   ||| ||||||||||||  ||   ||||||||||    
T  37599193 ggaaacaacacctcatttgtttgtatcttgtaacatttttagctctctttggtttcatgtatggtcttggctgggtattgattttgttctttcaggtgat 37599292  T
Q  125 cttcgtcaacatttcattcaatttactaatatggcgggactactta-atcaactcatctgtacttcagaatgatttggtttgcctatgttt 214  Q
    |||||||||||||| || || |||||||| ||||||||  | |||| |||||||||| |||| ||||  || ||||||||||||| |||||    
T  37599293 cttcgtcaacattttatccagtttactaagatggcggggttgcttagatcaactcatttgtatttcaagattatttggtttgcctctgttt 37599383  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 214
Target Start/End: Original strand, 24220958 - 24221159
Alignment:
Q  14 tgtgggaattgggaaacagcagcacatttatttttatcttgtgacatatttagctctctttggtcccatgtttagctctggttgggtattgattcggtat 113  Q
    |||||| ||| ||||||| || | ||||| ||| || ||||| |||| ||||||||||||| ||  ||||| | |   ||| |||||||||||   | |     
T  24220958 tgtgggcatttggaaacaacatcccatttgtttgtaacttgtaacatttttagctctctttagtttcatgtatggtcttggctgggtattgatattgaac 24221057  T
Q  114 cttcaggtgatcttcgtcaacatttcattcaatttactaatatggcgggactactta-atcaactcatctgtacttcagaatgatttggtttgcctatgt 212  Q
    |||||||||||||||||| |||||| ||| | |||||||| ||||||||  | | || |||||||||| |||  ||||| || |||||||||||||||||    
T  24221058 cttcaggtgatcttcgtccacattttattaagtttactaagatggcggggttgcctagatcaactcatttgtttttcaggattatttggtttgcctatgt 24221157  T
Q  213 tt 214  Q
    ||    
T  24221158 tt 24221159  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 163
Target Start/End: Complemental strand, 32487644 - 32487550
Alignment:
Q  69 ctctttggtcccatgtttagctctggttgggtattgattcggtatcttcaggtgatcttcgtcaacatttcattcaatttactaatatggcggga 163  Q
    |||||||||||||||| | || |||||||||||||  ||||||   ||| ||||| |||||  | |||||| |||| ||||| ||||||||||||    
T  32487644 ctctttggtcccatgtgtggcactggttgggtatttcttcggttcgttctggtgagcttcgatatcatttccttcagtttacaaatatggcggga 32487550  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 161
Target Start/End: Complemental strand, 23761741 - 23761648
Alignment:
Q  68 tctctttggtcccatgtttagctctggttgggtattgattcggtatcttcaggtgatcttcgtcaacatttcattcaatttactaatatggcgg 161  Q
    ||||||||||| ||||||| ||  ||||||||||||  |||||| |||| ||||||||| |||||||||||||| |||||||||| || |||||    
T  23761741 tctctttggtctcatgtttggcattggttgggtatttcttcggtttcttaaggtgatctccgtcaacatttcatccaatttactactacggcgg 23761648  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 214
Target Start/End: Original strand, 13064002 - 13064192
Alignment:
Q  25 ggaaacagcagcacatttatttttatcttgtgacatatttagctctctttggtcccatgtttagctctggttgggtattgattcggtatcttcaggtgat 124  Q
    ||||||| || | ||||| ||| |||||||| |||| ||| | ||||||||||  ||||| | |   ||| ||||||||||||  ||  |||||||||||    
T  13064002 ggaaacaacatctcatttgtttgtatcttgtaacatttttggttctctttggtttcatgtatggtcttggctgggtattgattttgttccttcaggtgat 13064101  T
Q  125 cttcgtcaacatttcattcaatttactaatatggcgggactactta-atcaactcatctgtacttcagaatgatttggtttgcctatgttt 214  Q
    ||| |||||||||| ||||| |||||||| ||||||||  | | || |||||||||| ||||  |||| || ||||||||||||| |||||    
T  13064102 ctttgtcaacattttattcagtttactaagatggcggggttgcctagatcaactcatttgtatgtcaggattatttggtttgcctctgttt 13064192  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 214
Target Start/End: Complemental strand, 44362466 - 44362276
Alignment:
Q  25 ggaaacagcagcacatttatttttatcttgtgacatatttagctctctttggtcccatgtttagctctggttgggtattgattcggtatcttcaggtgat 124  Q
    ||||||| || | ||||| ||| || ||||| |||| ||||||||| ||||||  ||||| | |   ||| ||||||||||||  ||| |||||||||||    
T  44362466 ggaaacatcatctcatttgtttgtaacttgtaacatttttagctctatttggtttcatgtatggtcttggctgggtattgattttgtaccttcaggtgat 44362367  T
Q  125 cttcgtcaacatttcattcaatttactaatatggcgggactactta-atcaactcatctgtacttcagaatgatttggtttgcctatgttt 214  Q
    |||||||||||||| || || || ||||| |||| |||  | | || |||||||||| |||| ||||| || ||||||||||||| |||||    
T  44362366 cttcgtcaacattttatgcagttcactaagatggtggggttgcctagatcaactcatttgtatttcaggattatttggtttgcctctgttt 44362276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 214
Target Start/End: Original strand, 20129605 - 20129795
Alignment:
Q  25 ggaaacagcagcacatttatttttatcttgtgacatatttagctctctttggtcccatgtttagctctggttgggtattgattcggtatcttcaggtgat 124  Q
    ||||||| || | ||||| ||| || ||||| |||| ||||||||| ||||||  ||||| | |   ||| ||||||||||||  ||| |||||||||||    
T  20129605 ggaaacatcatctcatttgtttgtaacttgtaacatttttagctctatttggtttcatgtatggtcttggctgggtattgattttgtaccttcaggtgat 20129704  T
Q  125 cttcgtcaacatttcattcaatttactaatatggcgggactactta-atcaactcatctgtacttcagaatgatttggtttgcctatgttt 214  Q
    |||||||||||||| || || || ||||| |||| |||  | | || |||||||||| |||| ||||| || ||||||||||||| |||||    
T  20129705 cttcgtcaacattttatgcagttcactaagatggtggggttgcctagatcaactcatttgtatttcaggattatttggtttgcctctgttt 20129795  T

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