View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5262_low_4 (Length: 505)
Name: NF5262_low_4
Description: NF5262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5262_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 158 - 497
Target Start/End: Original strand, 8237746 - 8238068
Alignment:
| Q |
158 |
atgataggttttaggtgtgcaaatgcacattgtcttaaaagaattattcacctaaggtgaaaattcaccgggattctacaaactctttttgaaagatttt |
257 |
Q |
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| T |
8237746 |
atgataggttttaggtgtgcaaatgcacattgtcttaaaagaattattcacc-----------------gggattcaacaaactctttctgaaagatttt |
8237828 |
T |
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| Q |
258 |
gggtaaagaattgcaagaataaaacgtcgttgttaaaccatatgaaaactataagaagataattttatttattttttggtnnnnnnntaatgaaactaag |
357 |
Q |
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| T |
8237829 |
gggtaaagaattgcaagaataaaacgtcgttgttaaaccatatgaaaactacaagaagataattttatttattttttggtaaaaaaataatgaagctaag |
8237928 |
T |
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| Q |
358 |
aggcaactaagtcattatttaattaagatcgtaccagcatgttgatacattaccactgtcggaaagaacaatagcattatcctcaattttggcccggttg |
457 |
Q |
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| T |
8237929 |
aggcaactaagtcattatttaattaagatcgtaccagcatgttgatacattaccactgtcggaaagaacaatagcattatcctcaattttggcccggttg |
8238028 |
T |
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| Q |
458 |
cacatttaagattgtatacatgtttttggtttcctatgct |
497 |
Q |
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| T |
8238029 |
cacatttaagattgtatacatgtttttggtttcctctgct |
8238068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 473
Target Start/End: Original strand, 42271836 - 42271912
Alignment:
| Q |
402 |
atacattaccactgtcggaaagaacaatagcattatcctcaattt-----tggcccggttgcacatttaagattgta |
473 |
Q |
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| T |
42271836 |
atacattatcattgtcagaaagaacaatagaattgccctcaatttcgtgttggccctgttgcacatttaagattgta |
42271912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 473
Target Start/End: Original strand, 42284870 - 42284946
Alignment:
| Q |
402 |
atacattaccactgtcggaaagaacaatagcattatcctcaattt-----tggcccggttgcacatttaagattgta |
473 |
Q |
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| T |
42284870 |
atacattatcattgttagaaagaacaatagaattaccctcaatttcgtgttggccctgttgcacatttaagattgta |
42284946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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