View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5262_low_5 (Length: 481)
Name: NF5262_low_5
Description: NF5262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5262_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 13944784 - 13945243
Alignment:
| Q |
1 |
ataaattcatttatatgtctatttcaactcatctctactatttaacattattatgagatacaatcatttagtttaatcagttttgtcattgattcttgtg |
100 |
Q |
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| T |
13944784 |
ataaattcatttatatgtctatttcaactcatctctactatttaacattat---gagatacaatcatttagtttaatcagttttgtcattgattcttgtg |
13944880 |
T |
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| Q |
101 |
gtgtgttaaatgaccacgtgaatagtgagaacttatttcctttcgtgaaaagtttttggaaatttatactttaagtatagatgattacctccttaaacta |
200 |
Q |
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| T |
13944881 |
gtgtgttaaatgacgacgtgaatagtgagaacttatttcctttcgtgaaaagtttttggaaatttatactttaagtatagatgattacctccttaaacta |
13944980 |
T |
|
| Q |
201 |
caaattattagatattacactttcannnnnnnnn-gaaggggagatattatactttcatgtttagcatgtcacaccaatatttattttatatttcttacg |
299 |
Q |
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| T |
13944981 |
caaattattagatattatactttcattttttttttgaaggggagatattatactttcatgtttagcatgtcacaccaatatttattttatatttcttacg |
13945080 |
T |
|
| Q |
300 |
acatttgtatcgtgtcaacatgagatacaacatacatgtatatgtgtctagtttactgtgaaggattttctaatgctttacttgcatcccccatctattt |
399 |
Q |
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| T |
13945081 |
acatttgtatcgtgtcaacatgagatacaacatacatgtatatgtgtctagtttaccgtgaaggattttctaatgctttacttgcatcccccatctattt |
13945180 |
T |
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| Q |
400 |
tccattgccgctcccttttccaccgtcatgaaagtttacgacgtttccacctccgccacattt |
462 |
Q |
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| T |
13945181 |
tccattgccgctcccttttccaccgtcatgaaagtttacgacgtttccacctccgccacattt |
13945243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 353
Target Start/End: Original strand, 13939502 - 13939576
Alignment:
| Q |
280 |
tttattttatatttcttacgacatttg-tatcgtgtcaacatgagatacaacatacatgtatatgtgtctagttt |
353 |
Q |
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||||||||| ||||||||| ||||||| ||| | ||| |||| |||||| |||||||||||||| ||||||||| |
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| T |
13939502 |
tttattttacatttcttacaacatttgatattgcatcagcatgggatacatcatacatgtatatgcgtctagttt |
13939576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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