View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5262_low_8 (Length: 410)

Name: NF5262_low_8
Description: NF5262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5262_low_8
NF5262_low_8
[»] chr7 (20 HSPs)
chr7 (17-402)||(20010098-20010488)
chr7 (337-402)||(48880927-48880993)
chr7 (338-402)||(15329273-15329338)
chr7 (337-402)||(3961978-3962044)
chr7 (337-391)||(4974747-4974801)
chr7 (338-391)||(15577862-15577915)
chr7 (338-391)||(35444558-35444611)
chr7 (338-391)||(42611811-42611864)
chr7 (338-391)||(45637712-45637765)
chr7 (337-391)||(24394971-24395025)
chr7 (338-391)||(37477092-37477145)
chr7 (337-391)||(15238381-15238435)
chr7 (337-391)||(34482834-34482888)
chr7 (341-391)||(36790478-36790528)
chr7 (338-391)||(18036978-18037031)
chr7 (338-391)||(25167862-25167915)
chr7 (342-391)||(25167655-25167703)
chr7 (342-391)||(29737143-29737192)
chr7 (342-391)||(45637929-45637977)
chr7 (342-391)||(48880726-48880774)
[»] chr8 (37 HSPs)
chr8 (338-402)||(26042116-26042181)
chr8 (338-391)||(32064745-32064798)
chr8 (338-391)||(34665382-34665435)
chr8 (338-388)||(15187560-15187610)
chr8 (337-391)||(32393857-32393911)
chr8 (338-391)||(17841862-17841915)
chr8 (338-391)||(20091813-20091866)
chr8 (338-387)||(24211569-24211618)
chr8 (338-391)||(31347794-31347847)
chr8 (338-391)||(40780141-40780194)
chr8 (338-391)||(42755054-42755107)
chr8 (341-391)||(8453837-8453887)
chr8 (337-391)||(27835465-27835519)
chr8 (337-391)||(35353040-35353094)
chr8 (337-391)||(37132670-37132724)
chr8 (338-391)||(1645977-1646030)
chr8 (338-391)||(7017877-7017930)
chr8 (346-391)||(38016979-38017024)
chr8 (339-391)||(14128865-14128917)
chr8 (339-391)||(27782129-27782181)
chr8 (342-391)||(24844870-24844919)
chr8 (338-391)||(30835059-30835111)
chr8 (342-391)||(37986067-37986116)
chr8 (338-391)||(39772813-39772866)
chr8 (348-388)||(7021988-7022028)
chr8 (342-388)||(3890413-3890459)
chr8 (342-392)||(25581038-25581087)
chr8 (342-391)||(1503642-1503690)
chr8 (342-391)||(6108032-6108080)
chr8 (338-391)||(6108245-6108298)
chr8 (342-391)||(17841649-17841697)
chr8 (342-391)||(26041912-26041960)
chr8 (342-391)||(30055734-30055782)
chr8 (342-391)||(37132479-37132528)
chr8 (342-391)||(40779928-40779976)
chr8 (343-391)||(25581251-25581299)
chr8 (338-374)||(41819807-41819843)
[»] scaffold0178 (1 HSPs)
scaffold0178 (337-402)||(11620-11686)
[»] chr3 (34 HSPs)
chr3 (337-402)||(6041883-6041949)
chr3 (338-391)||(41224233-41224286)
chr3 (338-382)||(24343547-24343591)
chr3 (337-391)||(37217065-37217119)
chr3 (338-391)||(2754717-2754770)
chr3 (338-391)||(3137426-3137479)
chr3 (338-391)||(3574539-3574592)
chr3 (338-391)||(11347268-11347321)
chr3 (338-391)||(19650912-19650965)
chr3 (338-402)||(33839531-33839596)
chr3 (338-391)||(42297353-42297406)
chr3 (339-391)||(9797041-9797093)
chr3 (337-388)||(3456063-3456114)
chr3 (337-388)||(48160904-48160955)
chr3 (337-391)||(30385010-30385064)
chr3 (338-388)||(34482925-34482975)
chr3 (338-391)||(22426356-22426409)
chr3 (338-391)||(33113793-33113846)
chr3 (338-391)||(36865039-36865092)
chr3 (338-402)||(37522053-37522118)
chr3 (338-388)||(8320599-8320649)
chr3 (342-391)||(40328049-40328098)
chr3 (342-391)||(42921343-42921392)
chr3 (347-391)||(33839753-33839797)
chr3 (337-391)||(42921137-42921196)
chr3 (337-391)||(8362057-8362111)
chr3 (337-391)||(33145712-33145765)
chr3 (341-375)||(40327878-40327912)
chr3 (350-388)||(47738117-47738155)
chr3 (342-391)||(3137213-3137261)
chr3 (338-391)||(26612785-26612838)
chr3 (342-391)||(34482687-34482735)
chr3 (342-391)||(36864831-36864880)
chr3 (350-391)||(47738329-47738370)
[»] chr4 (31 HSPs)
chr4 (338-391)||(33530700-33530753)
chr4 (337-391)||(22199260-22199314)
chr4 (337-391)||(49387900-49387954)
chr4 (338-391)||(10442801-10442854)
chr4 (338-391)||(24392667-24392720)
chr4 (338-391)||(31078831-31078884)
chr4 (338-391)||(36072947-36073000)
chr4 (337-388)||(2624836-2624887)
chr4 (338-391)||(4751446-4751499)
chr4 (338-391)||(21802334-21802387)
chr4 (338-391)||(24128239-24128292)
chr4 (338-391)||(47290066-47290119)
chr4 (338-391)||(50156590-50156643)
chr4 (339-391)||(7745124-7745176)
chr4 (338-391)||(44893225-44893279)
chr4 (337-391)||(46441843-46441897)
chr4 (342-391)||(36073354-36073403)
chr4 (338-391)||(44893426-44893479)
chr4 (338-391)||(53123030-53123084)
chr4 (342-391)||(17655648-17655697)
chr4 (338-391)||(23964477-23964530)
chr4 (342-391)||(25063373-25063422)
chr4 (338-391)||(37934953-37935006)
chr4 (344-391)||(42671675-42671722)
chr4 (342-391)||(9089088-9089136)
chr4 (342-391)||(11314050-11314099)
chr4 (342-391)||(36073567-36073615)
chr4 (350-391)||(42671886-42671927)
chr4 (342-391)||(46442062-46442110)
chr4 (342-391)||(47290284-47290332)
chr4 (342-391)||(53123249-53123297)
[»] chr1 (26 HSPs)
chr1 (337-400)||(32000269-32000333)
chr1 (337-391)||(40214987-40215041)
chr1 (337-391)||(6883486-6883540)
chr1 (337-391)||(9910305-9910359)
chr1 (342-391)||(16045810-16045859)
chr1 (338-391)||(18404442-18404495)
chr1 (338-391)||(40273702-40273755)
chr1 (338-391)||(44094698-44094751)
chr1 (338-402)||(25973414-25973478)
chr1 (337-388)||(36966723-36966774)
chr1 (337-388)||(37821849-37821900)
chr1 (338-388)||(19015404-19015454)
chr1 (338-391)||(25463676-25463729)
chr1 (341-391)||(3559620-3559670)
chr1 (338-392)||(34519758-34519812)
chr1 (338-391)||(41876454-41876507)
chr1 (338-402)||(27523255-27523322)
chr1 (342-392)||(41876241-41876290)
chr1 (342-399)||(52064376-52064434)
chr1 (342-391)||(6883705-6883753)
chr1 (342-391)||(19015622-19015670)
chr1 (342-391)||(25973625-25973673)
chr1 (342-391)||(37821633-37821681)
chr1 (338-375)||(51620980-51621017)
chr1 (342-391)||(51737723-51737771)
chr1 (342-386)||(27523054-27523098)
[»] chr6 (16 HSPs)
chr6 (337-402)||(17176021-17176087)
chr6 (337-402)||(17705465-17705531)
chr6 (338-391)||(28675148-28675201)
chr6 (338-391)||(33695339-33695392)
chr6 (338-391)||(33696696-33696749)
chr6 (338-391)||(6127275-6127328)
chr6 (338-391)||(18365585-18365638)
chr6 (338-391)||(18370849-18370902)
chr6 (338-391)||(23291096-23291149)
chr6 (338-391)||(25986930-25986983)
chr6 (338-402)||(6031741-6031806)
chr6 (338-391)||(18889709-18889761)
chr6 (344-391)||(11548600-11548647)
chr6 (341-391)||(8515737-8515787)
chr6 (342-391)||(29693663-29693712)
chr6 (342-391)||(32702423-32702471)
[»] chr5 (26 HSPs)
chr5 (337-391)||(22913066-22913120)
chr5 (338-391)||(6043523-6043576)
chr5 (342-391)||(27481830-27481879)
chr5 (337-391)||(11361143-11361197)
chr5 (338-391)||(2477636-2477689)
chr5 (338-391)||(3362778-3362831)
chr5 (338-391)||(12614745-12614798)
chr5 (338-391)||(38899738-38899791)
chr5 (337-391)||(12850800-12850854)
chr5 (337-391)||(17545697-17545751)
chr5 (337-391)||(33584341-33584395)
chr5 (338-391)||(37321805-37321859)
chr5 (338-391)||(4892202-4892255)
chr5 (342-391)||(8145379-8145428)
chr5 (338-391)||(14138668-14138721)
chr5 (338-391)||(25398238-25398291)
chr5 (337-388)||(4434022-4434073)
chr5 (337-391)||(3522018-3522072)
chr5 (350-391)||(10458409-10458450)
chr5 (338-375)||(13664642-13664679)
chr5 (342-391)||(4892420-4892468)
chr5 (342-391)||(12851020-12851068)
chr5 (342-391)||(14138885-14138933)
chr5 (342-391)||(33584128-33584176)
chr5 (342-391)||(38899524-38899573)
chr5 (355-402)||(27482029-27482077)
[»] chr2 (18 HSPs)
chr2 (338-402)||(9723405-9723470)
chr2 (337-388)||(21936080-21936131)
chr2 (338-391)||(7475520-7475573)
chr2 (338-391)||(9293588-9293641)
chr2 (338-391)||(14941378-14941431)
chr2 (338-391)||(23268074-23268127)
chr2 (338-402)||(27847632-27847697)
chr2 (338-391)||(35160757-35160810)
chr2 (338-391)||(43330912-43330965)
chr2 (339-391)||(10661888-10661940)
chr2 (338-388)||(13354846-13354896)
chr2 (338-391)||(33380207-33380260)
chr2 (340-391)||(21393700-21393751)
chr2 (341-391)||(31174846-31174896)
chr2 (342-391)||(22592930-22592979)
chr2 (342-391)||(10662106-10662154)
chr2 (342-391)||(33380425-33380473)
chr2 (342-391)||(35160977-35161025)
[»] scaffold0471 (1 HSPs)
scaffold0471 (338-391)||(12842-12895)
[»] scaffold0096 (1 HSPs)
scaffold0096 (338-391)||(41011-41064)
[»] scaffold0085 (1 HSPs)
scaffold0085 (338-391)||(47850-47903)
[»] scaffold0204 (1 HSPs)
scaffold0204 (338-391)||(4396-4449)
[»] scaffold0665 (1 HSPs)
scaffold0665 (339-391)||(3069-3121)
[»] scaffold0228 (5 HSPs)
scaffold0228 (349-391)||(8413-8455)
scaffold0228 (349-391)||(15995-16037)
scaffold0228 (349-391)||(25947-25989)
scaffold0228 (342-391)||(16202-16250)
scaffold0228 (342-391)||(26154-26202)


Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 402
Target Start/End: Complemental strand, 20010488 - 20010098
Alignment:
Q  17 cattagacagtgttcacggacgacttcatattttcatatttgtcttcttaaccaacatatcaagataaatcttcatttcattatattatattccaacaac 116  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20010488 cattagaccgtgttcacagacgacttcatattttcatatttgtcttcttaaccaacatatcaagataaatcttcatttcattatattatattccaacaac 20010389  T
Q  117 attagatttatacgttgtcattttgatgctagtaattttataatgactaaattaaagatttatatacaagtttatcnnnnnnnnnnnnnnnnatagaata 216  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                | |||||     
T  20010388 attag-tttatacgttgtcattttgatgctagtaattttataatgactaaattaaagatttatatacaagtttatc-ttttttattttttttagagaatg 20010291  T
Q  217 caagtttatgttaaaacttctgttagata-----tgannnnnnnnnnctgaggggattctgatagatatgaataaaattaaacaaactattttgttttaa 311  Q
    |||||||||||||||||||||||||||||     | |          |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20010290 caagtttatgttaaaacttctgttagatattattttatttttttttcctgaggggattctgatagatatgaataaaattaaacaaactattttgttttaa 20010191  T
Q  312 aggcagaagtttaataa--tnnnnnnntgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacatacagaataatc 402  Q
    |||||||||||||||||          ||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||    
T  20010190 aggcagaagtttaataaataaaaaaaatgagcaatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgacatacagaataatc 20010098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 337 - 402
Target Start/End: Complemental strand, 48880993 - 48880927
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat-acagaataatc 402  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||    
T  48880993 tgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatgacagaataatc 48880927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 338 - 402
Target Start/End: Original strand, 15329273 - 15329338
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat-acagaataatc 402  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||    
T  15329273 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatgacagaataatc 15329338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 402
Target Start/End: Original strand, 3961978 - 3962044
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat-acagaataatc 402  Q
    ||||||||||||||||| |||||||||||||||||||||| || ||||||||||| |||||||||||    
T  3961978 tgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatgacagaataatc 3962044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 391
Target Start/End: Complemental strand, 4974801 - 4974747
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  4974801 tgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacat 4974747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 15577915 - 15577862
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  15577915 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacat 15577862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 35444558 - 35444611
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  35444558 gagcaatgctatatattaagaaagattttttcaagaaaatttcaagaatgacat 35444611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 42611811 - 42611864
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  42611811 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacat 42611864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 45637712 - 45637765
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  45637712 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacat 45637765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 391
Target Start/End: Original strand, 24394971 - 24395025
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||||||| |||||||||||||||||||||| || |||||||||||    
T  24394971 tgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacat 24395025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 37477145 - 37477092
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||| |||||||||||| |||||||||||    
T  37477145 gagcaatgctatatatcaagaaagattttctcaagaaaaatttaagaatgacat 37477092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 337 - 391
Target Start/End: Original strand, 15238381 - 15238435
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||||||| |||||| | ||| ||||||||||||||||||||||||    
T  15238381 tgagcaatgctatatatcaagaaaaaatttctcaagaaaaattcaagaatgacat 15238435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 337 - 391
Target Start/End: Original strand, 34482834 - 34482888
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||||||| |||||||||||||| ||||||| || |||||||||||    
T  34482834 tgagcaatgctatatatcaagaaagattttattaagaaaattttaagaatgacat 34482888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 341 - 391
Target Start/End: Complemental strand, 36790528 - 36790478
Alignment:
Q  341 caatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||| ||||||| ||||||||||||||||| |||||||||||    
T  36790528 caatgctatatatcaagaaagtttttatcaagaaaaatttaagaatgacat 36790478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 18036978 - 18037031
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||| ||||||| |||||||||||| |||||||||||| |||||||||||    
T  18036978 gagcaatgatatatatcaagaaagattttttcaagaaaaatttaagaatgacat 18037031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 25167915 - 25167862
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||| | ||||||| || |||||||||||    
T  25167915 gagcaatgctatatatcaagaaagatttttttaagaaaattttaagaatgacat 25167862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 25167655 - 25167703
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| |||||||| ||||||||||||||||||||||    
T  25167655 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacat 25167703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 29737143 - 29737192
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||| |||||||||||| | ||||||| || |||||||||||    
T  29737143 aatgctatatatcaagaaagatttttttaagaaaattttaagaatgacat 29737192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 45637977 - 45637929
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||||||||| |||||||| |||||| |||||||||||||||    
T  45637977 aatgctagatattaagaatgattttat-aagaaagattcaagaatgacat 45637929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 48880726 - 48880774
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| |||||||| ||||||||||||||||||||||    
T  48880726 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacat 48880774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 37)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 338 - 402
Target Start/End: Complemental strand, 26042181 - 26042116
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat-acagaataatc 402  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  26042181 gagcaatgctatatattaagaaagattttatcaagaaaatttcaagaatgacatgacagaataatc 26042116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 32064745 - 32064798
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  32064745 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacat 32064798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 34665382 - 34665435
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  34665382 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacat 34665435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 388
Target Start/End: Original strand, 15187560 - 15187610
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatga 388  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  15187560 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 15187610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 391
Target Start/End: Original strand, 32393857 - 32393911
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||||||| |||||||||||||||||||||| || |||||||||||    
T  32393857 tgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacat 32393911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 17841915 - 17841862
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||| ||||||||| ||||||||||||||    
T  17841915 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacat 17841862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 20091866 - 20091813
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||| ||||||||||||||| ||||||||||||||    
T  20091866 gagcaatgctatatatcaagaaatattttatcaagaaaatttcaagaatgacat 20091813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 387
Target Start/End: Complemental strand, 24211618 - 24211569
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatg 387  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  24211618 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatg 24211569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 31347847 - 31347794
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  31347847 gagcaatgctatatatcaagaaatattttctcaagaaaaattcaagaatgacat 31347794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 40780194 - 40780141
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||| ||||||||| ||||||||||||||    
T  40780194 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacat 40780141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 42755107 - 42755054
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||| ||||||| |||||||||||||||||||||| ||||||||||||||    
T  42755107 gagcaatgatatatatcaagaaagattttatcaagaaaatttcaagaatgacat 42755054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 341 - 391
Target Start/End: Original strand, 8453837 - 8453887
Alignment:
Q  341 caatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||| |||||||||||| ||||||||| ||||||||||||||    
T  8453837 caatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacat 8453887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 337 - 391
Target Start/End: Complemental strand, 27835519 - 27835465
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||||||| || |||||| |||| ||||||||||||||||||||||    
T  27835519 tgagcaatgctatatatcaataaagatcttattaagaaaaattcaagaatgacat 27835465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 337 - 391
Target Start/End: Original strand, 35353040 - 35353094
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||||||| |||||||||||| ||||||||| || |||||||||||    
T  35353040 tgagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgacat 35353094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 337 - 391
Target Start/End: Complemental strand, 37132724 - 37132670
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||||||| || ||| |||||||||||||||||| |||||||||||    
T  37132724 tgagcaatgctatatatcaaaaaatattttatcaagaaaaatttaagaatgacat 37132670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 1646030 - 1645977
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||||||||||||| || ||||| |||||    
T  1646030 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaaagacat 1645977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 7017930 - 7017877
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| | |||||||||| | ||||||||||||||||||||||    
T  7017930 gagcaatgctatatatcatgaaagattttcttaagaaaaattcaagaatgacat 7017877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 346 - 391
Target Start/End: Original strand, 38016979 - 38017024
Alignment:
Q  346 ctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||    
T  38016979 ctatatatcaagaaagattttatcaagaaaatttcaagaatgacat 38017024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 391
Target Start/End: Original strand, 14128865 - 14128917
Alignment:
Q  339 agcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||||| ||||||||||||||||| |||| || |||||||||||    
T  14128865 agcaatgctatatatcaagaaagattttatcaataaaattttaagaatgacat 14128917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 391
Target Start/End: Complemental strand, 27782181 - 27782129
Alignment:
Q  339 agcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||||| |||||| |||||||||||||| |||||| ||||||||    
T  27782181 agcaatgctatatatcaagaaatattttatcaagaaagattcaataatgacat 27782129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 24844919 - 24844870
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| |||||| ||||||| ||||||||||||||||||||||    
T  24844919 aatgctacatatcaagaaatattttattaagaaaaattcaagaatgacat 24844870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 30835111 - 30835059
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||| ||||||| ||||||||||||||| | |||||||||||||||||||    
T  30835111 gagcaatgttatatatcaagaaagattttatcga-aaaaattcaagaatgacat 30835059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 37986116 - 37986067
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||| ||||||||||||||||| |||| || |||||||||||    
T  37986116 aatgctatatatcaagaaagattttatcaaaaaaattttaagaatgacat 37986067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 39772866 - 39772813
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||| ||||||| |||||| |||||||||| |||| ||||||||||||||    
T  39772866 gagcaatgttatatatcaagaaatattttatcaaaaaaatttcaagaatgacat 39772813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 388
Target Start/End: Original strand, 7021988 - 7022028
Alignment:
Q  348 atatattaagaaagattttatcaagaaaaattcaagaatga 388  Q
    |||||| |||||||||||| |||||||||||||||||||||    
T  7021988 atatatcaagaaagattttctcaagaaaaattcaagaatga 7022028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 388
Target Start/End: Original strand, 3890413 - 3890459
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatga 388  Q
    ||||||| |||| ||||| ||||||||||||||| ||||||||||||    
T  3890413 aatgctagatatcaagaatgattttatcaagaaagattcaagaatga 3890459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 392
Target Start/End: Original strand, 25581038 - 25581087
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacata 392  Q
    ||||||| |||| ||||| |||||||| |||||||||||||||||||||||    
T  25581038 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacata 25581087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 1503642 - 1503690
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| |||||||| ||||||||||||||||||||||    
T  1503642 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacat 1503690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 6108032 - 6108080
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| |||||||| ||||||||||||||||||||||    
T  6108032 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacat 6108080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 6108298 - 6108245
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||| ||||||| |||||||||||| | ||||||| || |||||||||||    
T  6108298 gagcaatgttatatatcaagaaagatttttttaagaaaattttaagaatgacat 6108245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 17841649 - 17841697
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| |||||||| ||||||||||||||||||||||    
T  17841649 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacat 17841697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 26041912 - 26041960
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| |||||||| ||||||||||||||||||||||    
T  26041912 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacat 26041960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 30055782 - 30055734
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||||||||| |||||||| |||||| |||||||||||||||    
T  30055782 aatgctagatattaagaatgattttat-aagaaagattcaagaatgacat 30055734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 37132479 - 37132528
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| ||||||||||||||| ||||| |||||||||    
T  37132479 aatgctagatatcaagaatgattttatcaagaaagattcatgaatgacat 37132528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 40779928 - 40779976
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| |||||||| ||||||||||||||||||||||    
T  40779928 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacat 40779976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 25581299 - 25581251
Alignment:
Q  343 atgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||| ||||||| |||||  ||||||| ||||||||||||||    
T  25581299 atgctatatatcaagaaagtttttacgaagaaaatttcaagaatgacat 25581251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 374
Target Start/End: Complemental strand, 41819843 - 41819807
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaa 374  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  41819843 gagcaatgttatatatcaagaaagattttatcaagaa 41819807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 337 - 402
Target Start/End: Original strand, 11620 - 11686
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat-acagaataatc 402  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||    
T  11620 tgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatgacagaataatc 11686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 337 - 402
Target Start/End: Original strand, 6041883 - 6041949
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat-acagaataatc 402  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||    
T  6041883 tgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatgacagaataatc 6041949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 41224233 - 41224286
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41224233 gagcactgctatatattaagaaagattttctcaagaaaaattcaagaatgacat 41224286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 338 - 382
Target Start/End: Original strand, 24343547 - 24343591
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaa 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  24343547 gagcaatgctatatattaagaaagattttatcaagaaaaattcaa 24343591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 391
Target Start/End: Complemental strand, 37217119 - 37217065
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||||||| |||||||||||||||||||||| || |||||||||||    
T  37217119 tgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacat 37217065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 2754717 - 2754770
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||||||||||||| || |||||||||||    
T  2754717 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacat 2754770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 3137479 - 3137426
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||| ||||||||| ||||||||||||||    
T  3137479 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacat 3137426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 3574592 - 3574539
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||||||||||||| || |||||||||||    
T  3574592 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacat 3574539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 11347268 - 11347321
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||||||||||||| || |||||||||||    
T  11347268 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacat 11347321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 19650965 - 19650912
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||| |||||||||||||||||||||||||||||| || |||||||||||    
T  19650965 gagcaatgttatatattaagaaagattttatcaagaaaattttaagaatgacat 19650912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 402
Target Start/End: Original strand, 33839531 - 33839596
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat-acagaataatc 402  Q
    |||||||| ||||||||||||||||||||||||| ||||||| |||||| |||| |||||||||||    
T  33839531 gagcaatgttatatattaagaaagattttatcaaaaaaaatttaagaataacatgacagaataatc 33839596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 42297353 - 42297406
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||||||||||||| || |||||||||||    
T  42297353 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacat 42297406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 339 - 391
Target Start/End: Complemental strand, 9797093 - 9797041
Alignment:
Q  339 agcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| ||||||| |||||||||||| ||||||||||||||||||||||||    
T  9797093 agcaatgttatatatcaagaaagattttctcaagaaaaattcaagaatgacat 9797041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 388
Target Start/End: Original strand, 3456063 - 3456114
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatga 388  Q
    ||||||||||||||||| |||||||||||||||||||||| || ||||||||    
T  3456063 tgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatga 3456114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 388
Target Start/End: Original strand, 48160904 - 48160955
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatga 388  Q
    ||||||||||||||||| |||||||||||||||||||||| || ||||||||    
T  48160904 tgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatga 48160955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 337 - 391
Target Start/End: Original strand, 30385010 - 30385064
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||| ||| |||||||||||||||||||||| ||||| ||||||||    
T  30385010 tgagcaatgctatttatcaagaaagattttatcaagaaaatttcaaaaatgacat 30385064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 338 - 388
Target Start/End: Complemental strand, 34482975 - 34482925
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatga 388  Q
    |||||||||||||||| |||||||||||| ||||||||| |||||||||||    
T  34482975 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatga 34482925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 22426409 - 22426356
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||| |||||||||||||||||||||||||||||| || || ||||||||    
T  22426409 gagcaatgttatatattaagaaagattttatcaagaaaattttaaaaatgacat 22426356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 33113793 - 33113846
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||||| ||||||| ||||||||| ||||    
T  33113793 gagcaatgctatatatcaagaaagattttattaagaaaatttcaagaattacat 33113846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 36865092 - 36865039
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||||||| |||||||||| ||||||| || |||||||||||    
T  36865092 gagcaatgctatatattaaggaagattttattaagaaaattttaagaatgacat 36865039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 338 - 402
Target Start/End: Original strand, 37522053 - 37522118
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat-acagaataatc 402  Q
    ||||||| |||||||| |||||||||||| ||||||||| || ||||||||||| |||||||||||    
T  37522053 gagcaatactatatatcaagaaagattttttcaagaaaattttaagaatgacatgacagaataatc 37522118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 338 - 388
Target Start/End: Complemental strand, 8320649 - 8320599
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatga 388  Q
    |||||||| ||||||| |||||||||||||||||||||| || ||||||||    
T  8320649 gagcaatgttatatatcaagaaagattttatcaagaaaattttaagaatga 8320599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 40328098 - 40328049
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| ||||||||||||||| |||||||||||||||    
T  40328098 aatgctagatatcaagaatgattttatcaagaaagattcaagaatgacat 40328049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 42921392 - 42921343
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||||||||| ||||||||||||||| ||| |||||||||||    
T  42921392 aatgctagatattaagaatgattttatcaagaaatatttaagaatgacat 42921343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 391
Target Start/End: Complemental strand, 33839797 - 33839753
Alignment:
Q  347 tatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| ||||| ||||||||||||||| |||||||||||||||    
T  33839797 tatatatcaagaatgattttatcaagaaagattcaagaatgacat 33839753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 391
Target Start/End: Original strand, 42921137 - 42921196
Alignment:
Q  337 tgagcaatgctatatatta-----agaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||||||     ||||||||||||||||||||| || |||||||||||    
T  42921137 tgagcaatgctatatattatatcaagaaagattttatcaagaaaattttaagaatgacat 42921196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 391
Target Start/End: Complemental strand, 8362111 - 8362057
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||||||| |||||| |   | ||||||||||||||||||||||||    
T  8362111 tgagcaatgctatatatcaagaaaaaaaatttcaagaaaaattcaagaatgacat 8362057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 391
Target Start/End: Original strand, 33145712 - 33145765
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||||||| |||||||||||||| || |||| || |||||||||||    
T  33145712 tgagcaatgctatatatcaagaaagattttattaa-aaaattttaagaatgacat 33145765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 375
Target Start/End: Original strand, 40327878 - 40327912
Alignment:
Q  341 caatgctatatattaagaaagattttatcaagaaa 375  Q
    ||||||||||||| |||||||||||||||||||||    
T  40327878 caatgctatatatcaagaaagattttatcaagaaa 40327912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 47738117 - 47738155
Alignment:
Q  350 atattaagaaagattttatcaagaaaaattcaagaatga 388  Q
    |||| ||||||||||||||||||||| ||||||||||||    
T  47738117 atatcaagaaagattttatcaagaaatattcaagaatga 47738155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 3137213 - 3137261
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| |||||||| ||||||||||||||||||||||    
T  3137213 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacat 3137261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 26612785 - 26612838
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||  ||||||| || ||||||||||| || |||||||||||||||||||    
T  26612785 gagcaatattatatatcaaaaaagattttataaaaaaaaattcaagaatgacat 26612838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 34482687 - 34482735
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| |||||||| ||||||||||||||||||||||    
T  34482687 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacat 34482735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 36864831 - 36864880
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| ||||||||||| ||| |||||||||||||||    
T  36864831 aatgctagatatcaagaatgattttatcaaaaaagattcaagaatgacat 36864880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 391
Target Start/End: Complemental strand, 47738370 - 47738329
Alignment:
Q  350 atattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||| ||||| ||||||||||||||| |||||||||||||||    
T  47738370 atatcaagaatgattttatcaagaaagattcaagaatgacat 47738329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 33530753 - 33530700
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33530753 gagcaatgctatatatcaagaaagattttatcaagaaaaattcaagaatgacat 33530700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 391
Target Start/End: Original strand, 22199260 - 22199314
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  22199260 tgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacat 22199314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 391
Target Start/End: Complemental strand, 49387954 - 49387900
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  49387954 tgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacat 49387900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 10442854 - 10442801
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  10442854 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacat 10442801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 24392667 - 24392720
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  24392667 gagcaatgctatatatcaagaaagattttctcaagaaaaattcaagaatgacat 24392720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 31078884 - 31078831
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  31078884 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacat 31078831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 36072947 - 36073000
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  36072947 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacat 36073000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 337 - 388
Target Start/End: Original strand, 2624836 - 2624887
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatga 388  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  2624836 tgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 2624887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 4751446 - 4751499
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||||||||||||| | ||||||||||||    
T  4751446 gagcaatgctatatatcaagaaagattttatcaagaaaattccaagaatgacat 4751499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 21802387 - 21802334
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||| ||||||||||||||| ||||||||||||||    
T  21802387 gagcaatgctatatatcaagaaatattttatcaagaaaatttcaagaatgacat 21802334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 24128239 - 24128292
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||| ||||||||| ||||||||||||||    
T  24128239 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacat 24128292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 47290066 - 47290119
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||| ||||||||| ||||||||||||||    
T  47290066 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacat 47290119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 50156643 - 50156590
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||||||||||||||||||| ||||||||| || |||||||||||    
T  50156643 gagcaatgctatatattaagaaagattttttcaagaaaattttaagaatgacat 50156590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 339 - 391
Target Start/End: Complemental strand, 7745176 - 7745124
Alignment:
Q  339 agcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||||| |||||||||||||||||||||| || |||||||||||    
T  7745176 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacat 7745124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 44893279 - 44893225
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaa-ttcaagaatgacat 391  Q
    ||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||    
T  44893279 gagcaatgctatatattaagaaagattttttcaaaaaaaatttcaagaatgacat 44893225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 337 - 391
Target Start/End: Original strand, 46441843 - 46441897
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||||||| |||||||||||| | ||||||| ||||||||||||||    
T  46441843 tgagcaatgctatatatcaagaaagatttttttaagaaaatttcaagaatgacat 46441897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 36073354 - 36073403
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||| |||||||||||| ||||||||| ||||||||||||||    
T  36073354 aatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacat 36073403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 44893426 - 44893479
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||| |||| |||| ||||||||||||||    
T  44893426 gagcaatgctatatatcaagaaagattttttcaaaaaaatttcaagaatgacat 44893479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 53123030 - 53123084
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatc-aagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||| || ||||||| ||||||||||||||    
T  53123030 gagcaatgctatatatcaagaaagattttttcaaagaaaatttcaagaatgacat 53123084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 17655697 - 17655648
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||||||||| ||||||||||||||| ||| |||||||||||    
T  17655697 aatgctagatattaagaatgattttatcaagaaagatttaagaatgacat 17655648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 23964530 - 23964477
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||| ||||||| ||||||||||||||||| |||| || |||||||||||    
T  23964530 gagcaatgttatatatcaagaaagattttatcaaaaaaattttaagaatgacat 23964477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 25063373 - 25063422
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| ||||||||||||||| |||||||||||||||    
T  25063373 aatgctagatatcaagaatgattttatcaagaaagattcaagaatgacat 25063422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 37935006 - 37934953
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| || |||||||||||||| ||||  |||||||||||||    
T  37935006 gagcaatgctatatatcaaaaaagattttatcaaaaaaatgtcaagaatgacat 37934953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 391
Target Start/End: Original strand, 42671675 - 42671722
Alignment:
Q  344 tgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||| || |||||||||||||| ||||||| |||||||||||    
T  42671675 tgctatatatcaataaagattttatcaaaaaaaatttaagaatgacat 42671722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 9089136 - 9089088
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| |||||||| ||||||||||||||||||||||    
T  9089136 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacat 9089088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 11314050 - 11314099
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| ||||||||||||||| || ||||||||||||    
T  11314050 aatgctagatatcaagaatgattttatcaagaaagatgcaagaatgacat 11314099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 36073615 - 36073567
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| |||||||| ||||||||||||||||||||||    
T  36073615 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacat 36073567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 391
Target Start/End: Complemental strand, 42671927 - 42671886
Alignment:
Q  350 atattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||| ||||| ||||||||||||||| |||||||||||||||    
T  42671927 atatcaagaatgattttatcaagaaagattcaagaatgacat 42671886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 46442110 - 46442062
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| |||||||| ||||||||||||||||||||||    
T  46442110 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacat 46442062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 47290332 - 47290284
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| |||||||| ||||||||||||||||||||||    
T  47290332 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacat 47290284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 53123297 - 53123249
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| |||||||| ||||||||||||||||||||||    
T  53123297 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacat 53123249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 32000333 - 32000269
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat-acagaataa 400  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||    
T  32000333 tgagcaatgctatatatcaagaaagattttctcaagaaaaattcaagaatgacatgacagaataa 32000269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 391
Target Start/End: Original strand, 40214987 - 40215041
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  40214987 tgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacat 40215041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 391
Target Start/End: Original strand, 6883486 - 6883540
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||||||||||||||||| | ||||||| ||||||||||||||    
T  6883486 tgagcaatgctatatattaagaaagatttttttaagaaaatttcaagaatgacat 6883540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 391
Target Start/End: Complemental strand, 9910359 - 9910305
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||    
T  9910359 tgagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacat 9910305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 16045859 - 16045810
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  16045859 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacat 16045810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 18404442 - 18404495
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||||||||||||| || |||||||||||    
T  18404442 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacat 18404495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 40273702 - 40273755
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  40273702 gagcaatgctagatatcaagaaagattttttcaagaaaaattcaagaatgacat 40273755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 44094698 - 44094751
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||| ||||||||||||||| ||||||||||||||    
T  44094698 gagcaatgctatatatcaagaaatattttatcaagaaaatttcaagaatgacat 44094751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 338 - 402
Target Start/End: Original strand, 25973414 - 25973478
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacatacagaataatc 402  Q
    |||||||| ||||||| |||||||||||||||| ||||| |||||||||||||  ||||||||||    
T  25973414 gagcaatgttatatatcaagaaagattttatcatgaaaatttcaagaatgacaggcagaataatc 25973478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 388
Target Start/End: Complemental strand, 36966774 - 36966723
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatga 388  Q
    ||||||||||||||||| |||||||||||| ||||||||| |||||||||||    
T  36966774 tgagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatga 36966723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 388
Target Start/End: Complemental strand, 37821900 - 37821849
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatga 388  Q
    ||||||||||||||||| |||||||||||| ||||||||| |||||||||||    
T  37821900 tgagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatga 37821849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 338 - 388
Target Start/End: Original strand, 19015404 - 19015454
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatga 388  Q
    |||||||||||||||| |||||||||||| ||||||||| |||||||||||    
T  19015404 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatga 19015454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 25463676 - 25463729
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||||| ||||||| || |||||||||||    
T  25463676 gagcaatgctatatatcaagaaagattttatgaagaaaattttaagaatgacat 25463729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 341 - 391
Target Start/End: Original strand, 3559620 - 3559670
Alignment:
Q  341 caatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||| ||||||||||||||||| |||| || |||||||||||    
T  3559620 caatgctatatatcaagaaagattttatcaaaaaaattttaagaatgacat 3559670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 338 - 392
Target Start/End: Original strand, 34519758 - 34519812
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacata 392  Q
    |||||||||||||||| |||||||||||||| |||||| |||||| |||| ||||    
T  34519758 gagcaatgctatatatcaagaaagattttattaagaaagattcaaaaatgccata 34519812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 41876507 - 41876454
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||| |||| |||| || |||||||||||    
T  41876507 gagcaatgctatatatcaagaaagattttttcaaaaaaattttaagaatgacat 41876454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 402
Target Start/End: Complemental strand, 27523322 - 27523255
Alignment:
Q  338 gagcaatgctatata--ttaagaaagattttatcaagaaaaattcaagaatgacat-acagaataatc 402  Q
    |||||||||||||||  | |||||  |||||||||||||||||| ||||||||||| |||||||||||    
T  27523322 gagcaatgctatatacatcaagaacaattttatcaagaaaaatttaagaatgacatgacagaataatc 27523255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 392
Target Start/End: Original strand, 41876241 - 41876290
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacata 392  Q
    ||||||| |||| ||||| |||||||| |||||||||||||||||||||||    
T  41876241 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacata 41876290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 399
Target Start/End: Original strand, 52064376 - 52064434
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat-acagaata 399  Q
    ||||||| |||| || || ||||||||||||||| ||||||||||||||| ||||||||    
T  52064376 aatgctagatatcaaaaatgattttatcaagaaagattcaagaatgacatgacagaata 52064434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 6883753 - 6883705
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| |||||||| ||||||||||||||||||||||    
T  6883753 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacat 6883705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 19015670 - 19015622
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| |||||||| ||||||||||||||||||||||    
T  19015670 aatgctacatatcaagaatgattttat-aagaaaaattcaagaatgacat 19015622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 25973673 - 25973625
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| |||||||| ||||||||||||||||||||||    
T  25973673 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacat 25973625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 37821633 - 37821681
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| |||||||| ||||||||||||||||||||||    
T  37821633 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacat 37821681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 375
Target Start/End: Original strand, 51620980 - 51621017
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaa 375  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  51620980 gagcaatgctatatatcaagaaagattttattaagaaa 51621017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 51737771 - 51737723
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| |||||||| ||||||||||||||||||||||    
T  51737771 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacat 51737723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 386
Target Start/End: Original strand, 27523054 - 27523098
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaat 386  Q
    |||| ||||||| ||||| ||||||||||||||| ||||||||||    
T  27523054 aatgttatatatcaagaatgattttatcaagaaagattcaagaat 27523098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 402
Target Start/End: Complemental strand, 17176087 - 17176021
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat-acagaataatc 402  Q
    ||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| |||||||||||    
T  17176087 tgagcaatgctatatatcaagaaagattttatcaataaaatttcaagaatgacatgacagaataatc 17176021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 402
Target Start/End: Complemental strand, 17705531 - 17705465
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat-acagaataatc 402  Q
    ||||||||||||||||| |||||||||||||||||||||| || ||||||||||| |||||||||||    
T  17705531 tgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatgacagaataatc 17705465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 28675148 - 28675201
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  28675148 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacat 28675201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 33695392 - 33695339
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  33695392 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacat 33695339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 33696696 - 33696749
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  33696696 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacat 33696749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 6127275 - 6127328
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||||||||||||| || |||||||||||    
T  6127275 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacat 6127328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 18365638 - 18365585
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| ||||||||||||||||| |||| ||||||||||||||    
T  18365638 gagcaatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgacat 18365585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 18370902 - 18370849
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| ||||||||||||||||| |||| ||||||||||||||    
T  18370902 gagcaatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgacat 18370849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 23291149 - 23291096
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||||||||||||| || |||||||||||    
T  23291149 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacat 23291096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 25986930 - 25986983
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||||| ||||||| ||||||||||||||    
T  25986930 gagcaatgctatatatcaagaaagattttattaagaaaatttcaagaatgacat 25986983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 338 - 402
Target Start/End: Complemental strand, 6031806 - 6031741
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat-acagaataatc 402  Q
    |||||||||||||||| ||||||||||| ||||| |||| || ||||||||||| |||||||||||    
T  6031806 gagcaatgctatatatcaagaaagatttcatcaataaaattttaagaatgacatgacagaataatc 6031741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 18889761 - 18889709
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| ||||||||||| |||||||||| ||||||||||||||    
T  18889761 gagcaatgctatatatcaagaaagattt-atcaagaaaatttcaagaatgacat 18889709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 391
Target Start/End: Complemental strand, 11548647 - 11548600
Alignment:
Q  344 tgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  11548647 tgctatatatcaagaaaaattttctcaagaaaaattcaagaatgacat 11548600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 341 - 391
Target Start/End: Complemental strand, 8515787 - 8515737
Alignment:
Q  341 caatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||| ||||||||||||||||||| | ||| |||||||||||    
T  8515787 caatgctatatatcaagaaagattttatcaagacagatttaagaatgacat 8515737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 29693712 - 29693663
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| ||||||||||||||| ||| |||||||||||    
T  29693712 aatgctagatatcaagaatgattttatcaagaaagatttaagaatgacat 29693663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 32702471 - 32702423
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| |||||||| ||||||||||||||||||||||    
T  32702471 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacat 32702423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 391
Target Start/End: Complemental strand, 22913120 - 22913066
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  22913120 tgagcaatgctatatatcaagaaagattttttcaagaaaaattcaagaatgacat 22913066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 6043576 - 6043523
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  6043576 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacat 6043523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 27481830 - 27481879
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27481830 aatgctatgtattaagaaagattttatcaagaaaaattcaagaatgacat 27481879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 391
Target Start/End: Complemental strand, 11361197 - 11361143
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||||||| |||||||||||||||||||||| || |||||||||||    
T  11361197 tgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacat 11361143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 2477636 - 2477689
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||||||||||||| || |||||||||||    
T  2477636 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacat 2477689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 3362778 - 3362831
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||||||||||||| | ||||||||||||    
T  3362778 gagcaatgctatatatcaagaaagattttatcaagaaaattccaagaatgacat 3362831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 12614798 - 12614745
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||| |||||||||||||| |||||||||||||||    
T  12614798 gagcaatgctatatatcaagaaatattttatcaagaaagattcaagaatgacat 12614745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 38899791 - 38899738
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||||||||||||| | ||||||||||||    
T  38899791 gagcaatgctatatatcaagaaagattttatcaagaaaattccaagaatgacat 38899738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 337 - 391
Target Start/End: Original strand, 12850800 - 12850854
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||||||| |||||||||||||||||||||| | ||| ||||||||    
T  12850800 tgagcaatgctatatatcaagaaagattttatcaagaaaattccaaaaatgacat 12850854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 337 - 391
Target Start/End: Complemental strand, 17545751 - 17545697
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||||||| |||||| | ||| ||||||||||||||||||||||||    
T  17545751 tgagcaatgctatatatcaagaaaaaatttctcaagaaaaattcaagaatgacat 17545697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 337 - 391
Target Start/End: Complemental strand, 33584395 - 33584341
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||||||| |||||||||||| ||||||||| || |||||||||||    
T  33584395 tgagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgacat 33584341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 37321859 - 37321805
Alignment:
Q  338 gagcaatgctatatat-taagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| ||||||||||||||||||||||| || |||||||||||    
T  37321859 gagcaatgctatatatctaagaaagattttatcaagaaaattttaagaatgacat 37321805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 4892202 - 4892255
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||| ||||||||| || |||||||||||    
T  4892202 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgacat 4892255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 8145379 - 8145428
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||| ||||||| |||||||||||||||||||||| ||||||||||||||    
T  8145379 aatgttatatatcaagaaagattttatcaagaaaatttcaagaatgacat 8145428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 14138668 - 14138721
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||| ||||||| |||||||||||||||||||||| ||||||||| ||||    
T  14138668 gagcaatgttatatatcaagaaagattttatcaagaaaatttcaagaattacat 14138721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 25398238 - 25398291
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||| ||||||||| || |||||||||||    
T  25398238 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgacat 25398291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 388
Target Start/End: Complemental strand, 4434073 - 4434022
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatga 388  Q
    ||||||||||||||||| |||||||||||| | ||||||| |||||||||||    
T  4434073 tgagcaatgctatatatcaagaaagatttttttaagaaaatttcaagaatga 4434022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 337 - 391
Target Start/End: Complemental strand, 3522072 - 3522018
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||| ||||||| |||||||||||| ||||||||| ||||| ||||||||    
T  3522072 tgagcaatgttatatatcaagaaagattttttcaagaaaatttcaaaaatgacat 3522018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 391
Target Start/End: Original strand, 10458409 - 10458450
Alignment:
Q  350 atattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||| |||||| ||||||||||||||||||||||||||||||    
T  10458409 atatcaagaaaaattttatcaagaaaaattcaagaatgacat 10458450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 375
Target Start/End: Original strand, 13664642 - 13664679
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaa 375  Q
    |||||||| |||||||||||||||||||||||||||||    
T  13664642 gagcaatgttatatattaagaaagattttatcaagaaa 13664679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 4892468 - 4892420
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| |||||||| ||||||||||||||||||||||    
T  4892468 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacat 4892420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 12851068 - 12851020
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| |||||||| ||||||||||||||||||||||    
T  12851068 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacat 12851020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 14138933 - 14138885
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||||||||| |||||||| |||||| |||||||||||||||    
T  14138933 aatgctagatattaagaatgattttat-aagaaagattcaagaatgacat 14138885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 33584128 - 33584176
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| |||||||| ||||||||||||||||||||||    
T  33584128 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacat 33584176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 38899524 - 38899573
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| |||||||| || |||||||||||||||||||    
T  38899524 aatgctagatatcaagaatgattttataaaaaaaaattcaagaatgacat 38899573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 402
Target Start/End: Complemental strand, 27482077 - 27482029
Alignment:
Q  355 aagaaagattttatcaagaaaaattcaagaatgacat-acagaataatc 402  Q
    ||||| ||||||||||| ||| ||||||||||||||| |||||||||||    
T  27482077 aagaatgattttatcaaaaaagattcaagaatgacataacagaataatc 27482029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 402
Target Start/End: Original strand, 9723405 - 9723470
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat-acagaataatc 402  Q
    ||||||||||||||||||||||||||||||| |||||| ||| ||||||||||| |||||||||||    
T  9723405 gagcaatgctatatattaagaaagattttattaagaaagatttaagaatgacatgacagaataatc 9723470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 337 - 388
Target Start/End: Original strand, 21936080 - 21936131
Alignment:
Q  337 tgagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatga 388  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  21936080 tgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 21936131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 7475573 - 7475520
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||| ||||||||| ||||||||||||||    
T  7475573 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacat 7475520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 9293641 - 9293588
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||||||||||||  ||||||||||||||    
T  9293641 gagcaatgctatatatcaagaaagattttatcaagaaattttcaagaatgacat 9293588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 14941431 - 14941378
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||||| |||||| |||||||||||||||    
T  14941431 gagcaatgctatatatcaagaaagattttattaagaaagattcaagaatgacat 14941378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 23268127 - 23268074
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||| ||||||||| ||||||||||||||    
T  23268127 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacat 23268074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 402
Target Start/End: Original strand, 27847632 - 27847697
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat-acagaataatc 402  Q
    |||||||||| ||||| |||||||||||||| |||||| ||||||||||||||| |||||||||||    
T  27847632 gagcaatgctgtatataaagaaagattttattaagaaagattcaagaatgacatgacagaataatc 27847697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 35160757 - 35160810
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||||||||||||| || |||||||||||    
T  35160757 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacat 35160810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 43330912 - 43330965
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||| |||| |||||||||||||||||||    
T  43330912 gagcaatgctatatatcaagaaagattttctcaaaaaaaattcaagaatgacat 43330965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 339 - 391
Target Start/End: Original strand, 10661888 - 10661940
Alignment:
Q  339 agcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||||| |||||||||||||||||||||| || |||||||||||    
T  10661888 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacat 10661940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 338 - 388
Target Start/End: Original strand, 13354846 - 13354896
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatga 388  Q
    |||||||| ||||||| |||||||||||||||||||||| |||||||||||    
T  13354846 gagcaatgttatatatcaagaaagattttatcaagaaaatttcaagaatga 13354896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 33380207 - 33380260
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||| ||||||||| || |||||||||||    
T  33380207 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgacat 33380260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 391
Target Start/End: Complemental strand, 21393751 - 21393700
Alignment:
Q  340 gcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||| |||||| ||||| |||||||||||| |||||||||||    
T  21393751 gcaatgctatatatcaagaaaaattttctcaagaaaaatttaagaatgacat 21393700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 341 - 391
Target Start/End: Complemental strand, 31174896 - 31174846
Alignment:
Q  341 caatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||| ||||||| |||||||||||||| ||||||| ||||||||||||||    
T  31174896 caatgttatatatcaagaaagattttattaagaaaatttcaagaatgacat 31174846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 22592979 - 22592930
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| ||||||||||||||| |||||||||||||||    
T  22592979 aatgctagatatcaagaatgattttatcaagaaagattcaagaatgacat 22592930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 10662154 - 10662106
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| |||||||| ||||||||||||||||||||||    
T  10662154 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacat 10662106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 33380473 - 33380425
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| |||||||| ||||||||||||||||||||||    
T  33380473 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacat 33380425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 35161025 - 35160977
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| |||||||| ||||||||||||||||||||||    
T  35161025 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacat 35160977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 12842 - 12895
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||| ||||||||| ||||||||||||||    
T  12842 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacat 12895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 41011 - 41064
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| ||||||||||||||||| |||| ||||||||||||||    
T  41011 gagcaatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgacat 41064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 47850 - 47903
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||| ||| |||||||||||||||||||||| ||||||||||||||    
T  47850 gagcaatgctatttatcaagaaagattttatcaagaaaatttcaagaatgacat 47903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 4396 - 4449
Alignment:
Q  338 gagcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    |||||||||||||||| |||||||||||| ||||||||| || |||||||||||    
T  4396 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgacat 4449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 391
Target Start/End: Original strand, 3069 - 3121
Alignment:
Q  339 agcaatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||||||||||| ||||||||||||||||| |||| || |||||||||||    
T  3069 agcaatgctatatatcaagaaagattttatcaataaaattttaagaatgacat 3121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 349 - 391
Target Start/End: Original strand, 8413 - 8455
Alignment:
Q  349 tatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||| |||||||||||||||||||||| ||||||||||||||    
T  8413 tatatcaagaaagattttatcaagaaaatttcaagaatgacat 8455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 349 - 391
Target Start/End: Original strand, 15995 - 16037
Alignment:
Q  349 tatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||| |||||||||||||||||||||| ||||||||||||||    
T  15995 tatatcaagaaagattttatcaagaaaatttcaagaatgacat 16037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 349 - 391
Target Start/End: Original strand, 25947 - 25989
Alignment:
Q  349 tatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||| |||||||||||||||||||||| ||||||||||||||    
T  25947 tatatcaagaaagattttatcaagaaaatttcaagaatgacat 25989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 16250 - 16202
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| |||||||| ||||||||||||||||||||||    
T  16250 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacat 16202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 26202 - 26154
Alignment:
Q  342 aatgctatatattaagaaagattttatcaagaaaaattcaagaatgacat 391  Q
    ||||||| |||| ||||| |||||||| ||||||||||||||||||||||    
T  26202 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacat 26154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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