View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5263-Insertion-1 (Length: 615)

Name: NF5263-Insertion-1
Description: NF5263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5263-Insertion-1
NF5263-Insertion-1
[»] chr7 (6 HSPs)
chr7 (275-615)||(18714953-18715294)
chr7 (8-219)||(18714714-18714925)
chr7 (409-479)||(25314032-25314102)
chr7 (416-466)||(21450970-21451020)
chr7 (409-462)||(25268807-25268860)
chr7 (381-434)||(33044013-33044066)
[»] chr5 (4 HSPs)
chr5 (409-480)||(41894406-41894477)
chr5 (408-466)||(6926328-6926386)
chr5 (419-466)||(39647142-39647189)
chr5 (414-479)||(2643865-2643930)
[»] chr8 (2 HSPs)
chr8 (414-480)||(33120561-33120627)
chr8 (511-539)||(5744517-5744545)
[»] chr1 (2 HSPs)
chr1 (410-502)||(6025946-6026041)
chr1 (409-464)||(4541569-4541624)
[»] chr6 (1 HSPs)
chr6 (413-468)||(24769302-24769357)
[»] chr4 (7 HSPs)
chr4 (422-481)||(47789165-47789224)
chr4 (411-468)||(2317026-2317083)
chr4 (419-480)||(50794573-50794634)
chr4 (511-539)||(1046665-1046693)
chr4 (414-470)||(20709967-20710023)
chr4 (414-470)||(32427123-32427179)
chr4 (409-480)||(34417810-34417882)


Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 275 - 615
Target Start/End: Original strand, 18714953 - 18715294
Alignment:
Q  275 tgcatgtaattttggcccatacatggagtaagtaaga-gtatgtatttgttgttttatctattgtgagttgtcgcatcaa-tagagaaaatacttgaatc 372  Q
    ||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||    
T  18714953 tgcatgtaaatttggcc-atacatggagtaagtaagaagtatgtatttgttgttttatctattgtgagttgtggcatcaaatatagaaaatacttgaatc 18715051  T
Q  373 agttagagttgtcaaatagccgctatagtgctaatgtagcatagcagaatttgaacaaatcgtttttgttctgaaatattctatttagtacaaagtgtcg 472  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18715052 agttagtgttgtcaaatagccgctatagtgctaatatagcatagcagaatttgaacaaattgtttttgttctgaaatattctatttagtacaaagtgtcg 18715151  T
Q  473 ttaaatagttatatcagcgctatagcactgctaagcgtaatttgaacaaactgttattttctgcaattcctgcttgacaacactgacatcaattaatatt 572  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  18715152 ttaaatagttatatcagcgctatagcactgctaagcgtaatttgaacaaactactattttctgcaattcctgcttgacaacactgacatcaattaatatt 18715251  T
Q  573 ttatacctctgacttttcttctcttgtctttgtctgtgacaac 615  Q
    |||||||||||| |||| ||||| |||| ||||||||| ||||    
T  18715252 ttatacctctgattttttttctcatgtccttgtctgtggcaac 18715294  T

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Target: chr7; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 8 - 219
Target Start/End: Original strand, 18714714 - 18714925
Alignment:
Q  8 tgcttaacataacttttgttgttattaatcattactggttatacttggttgctgttgttgtactcgttactgatcgatgatataaaatccaaccatgttt 107  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||| |||||||| |||| |||| |||||||||||||||    
T  18714714 tgcttaacataacttttgttgctattaatcattactagttatacttggttgctgttgttgtgctcattactgattgatggtatacaatccaaccatgttt 18714813  T
Q  108 tctcttcaccttgacnnnnnnnaatatcttgtctttctcacagctttatgaagatgacatgtgcctgtgcatattagatacaaatccgttgagtcatggg 207  Q
    |||||||||||| ||       |||||||||||  ||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  18714814 tctcttcaccttaactctttctaatatcttgtcactctaacagctttatgaagatgacatgtgcctgtgcatattggatacaaatccattgagtcatggg 18714913  T
Q  208 taaggtatcata 219  Q
    ||||||||||||    
T  18714914 taaggtatcata 18714925  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 479
Target Start/End: Complemental strand, 25314102 - 25314032
Alignment:
Q  409 tagcatagcagaatttgaacaaatcgtttttgttctgaaatattctatttagtacaaagtgtcgttaaata 479  Q
    ||||||||  |||||||||||||||||| ||||||||  |||  |||||| ||||||||||| ||||||||    
T  25314102 tagcatagaggaatttgaacaaatcgttattgttctgtgatacactatttggtacaaagtgttgttaaata 25314032  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 416 - 466
Target Start/End: Complemental strand, 21451020 - 21450970
Alignment:
Q  416 gcagaatttgaacaaatcgtttttgttctgaaatattctatttagtacaaa 466  Q
    ||||||||||||||||||  | |||||||| ||||| ||||||||||||||    
T  21451020 gcagaatttgaacaaatcactattgttctggaatatgctatttagtacaaa 21450970  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 462
Target Start/End: Original strand, 25268807 - 25268860
Alignment:
Q  409 tagcatagcagaatttgaacaaatcgtttttgttctgaaatattctatttagta 462  Q
    |||| ||||||||||||||||||||||| ||||||||  |||  ||||||||||    
T  25268807 tagcgtagcagaatttgaacaaatcgttattgttctgctatacactatttagta 25268860  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 434
Target Start/End: Complemental strand, 33044066 - 33044013
Alignment:
Q  381 ttgtcaaatagccgctatagtgctaatgtagcatagcagaatttgaacaaatcg 434  Q
    |||||||||||| |||||||||  |   ||||||||||||||||||||||||||    
T  33044066 ttgtcaaatagcagctatagtgacacaatagcatagcagaatttgaacaaatcg 33044013  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 409 - 480
Target Start/End: Original strand, 41894406 - 41894477
Alignment:
Q  409 tagcatagcagaatttgaacaaatcgtttttgttctgaaatattctatttagtacaaagtgtcgttaaatag 480  Q
    |||| ||||||||||||||||||| ||| |||||||| ||||  ||||||| |||||||||| || ||||||    
T  41894406 tagcctagcagaatttgaacaaattgttattgttctgcaatacgctatttactacaaagtgttgtcaaatag 41894477  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 466
Target Start/End: Original strand, 6926328 - 6926386
Alignment:
Q  408 gtagcatagcagaatttgaacaaatcgtttttgttctgaaatattctatttagtacaaa 466  Q
    |||||||||||||||||||||||||| || | |||||  ||||| ||||||||||||||    
T  6926328 gtagcatagcagaatttgaacaaatcattatcgttctacaatatgctatttagtacaaa 6926386  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 466
Target Start/End: Complemental strand, 39647189 - 39647142
Alignment:
Q  419 gaatttgaacaaatcgtttttgttctgaaatattctatttagtacaaa 466  Q
    |||||||||||||||||| ||||||||  |||| ||||||||||||||    
T  39647189 gaatttgaacaaatcgttattgttctgcgatatgctatttagtacaaa 39647142  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 479
Target Start/End: Original strand, 2643865 - 2643930
Alignment:
Q  414 tagcagaatttgaacaaatcgtttttgttctgaaatattctatttagtacaaagtgtcgttaaata 479  Q
    ||||| ||||||||||||||||| |||||||| ||||  ||||| ||||| |||||| || |||||    
T  2643865 tagcataatttgaacaaatcgttattgttctggaatacgctattaagtacgaagtgttgtcaaata 2643930  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 480
Target Start/End: Complemental strand, 33120627 - 33120561
Alignment:
Q  414 tagcagaatttgaacaaatcgtttttgttctgaaatattctatttagtacaaagtgtcgttaaatag 480  Q
    |||| |||| ||||||||||||| |||||||| ||||| |||||||||||||| ||| || ||||||    
T  33120627 tagcggaatctgaacaaatcgttgttgttctgcaatatgctatttagtacaaaatgttgtcaaatag 33120561  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 511 - 539
Target Start/End: Original strand, 5744517 - 5744545
Alignment:
Q  511 aatttgaacaaactgttattttctgcaat 539  Q
    |||||||||||||||||||||||||||||    
T  5744517 aatttgaacaaactgttattttctgcaat 5744545  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 410 - 502
Target Start/End: Complemental strand, 6026041 - 6025946
Alignment:
Q  410 agcatagcagaatttgaacaaatcgtttttgttctgaaatattctatttagtacaaagtgtcgttaaatagt---tatatcagcgctatagcactg 502  Q
    |||||||  |||||||||||||| ||| |||||| |  |||| |||||||||||||| ||| || |||||||   |||| ||||||||||||||||    
T  6026041 agcataggggaatttgaacaaatagttattgttccgcgatatgctatttagtacaaaatgttgtcaaatagtggctatagcagcgctatagcactg 6025946  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 464
Target Start/End: Original strand, 4541569 - 4541624
Alignment:
Q  409 tagcatagcagaatttgaacaaatcgtttttgttctgaaatattctatttagtaca 464  Q
    ||||||||||||| |||||||||||||| ||||| || ||||| |||||| |||||    
T  4541569 tagcatagcagaacttgaacaaatcgttattgttttgcaatatgctatttggtaca 4541624  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 468
Target Start/End: Original strand, 24769302 - 24769357
Alignment:
Q  413 atagcagaatttgaacaaatcgtttttgttctgaaatattctatttagtacaaagt 468  Q
    ||||| ||||||||||||||| || |||||||| ||||  ||||||||||||||||    
T  24769302 atagcggaatttgaacaaatcattattgttctgcaatacactatttagtacaaagt 24769357  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 481
Target Start/End: Original strand, 47789165 - 47789224
Alignment:
Q  422 tttgaacaaatcgtttttgttctgaaatattctatttagtacaaagtgtcgttaaatagt 481  Q
    ||||||||||||||| | |||||| |||| ||||||||||||||| ||| || |||||||    
T  47789165 tttgaacaaatcgttatcgttctgcaatactctatttagtacaaactgttgtcaaatagt 47789224  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 468
Target Start/End: Complemental strand, 2317083 - 2317026
Alignment:
Q  411 gcatagcagaatttgaacaaatcgtttttgttctgaaatattctatttagtacaaagt 468  Q
    ||||||| ||||||||||||||||| |||||||||   ||| |||||||||| |||||    
T  2317083 gcatagcggaatttgaacaaatcgtgtttgttctgtgctatgctatttagtagaaagt 2317026  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 480
Target Start/End: Original strand, 50794573 - 50794634
Alignment:
Q  419 gaatttgaacaaatcgtttttgttctgaaatattctatttagtacaaagtgtcgttaaatag 480  Q
    |||||||||||||||||  |||||||| | ||| ||| |||||||||||||| || ||||||    
T  50794573 gaatttgaacaaatcgtcattgttctgcactatgctagttagtacaaagtgttgtcaaatag 50794634  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 511 - 539
Target Start/End: Original strand, 1046665 - 1046693
Alignment:
Q  511 aatttgaacaaactgttattttctgcaat 539  Q
    |||||||||||||||||||||||||||||    
T  1046665 aatttgaacaaactgttattttctgcaat 1046693  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 414 - 470
Target Start/End: Complemental strand, 20710023 - 20709967
Alignment:
Q  414 tagcagaatttgaacaaatcgtttttgttctgaaatattctatttagtacaaagtgt 470  Q
    |||| |||||||||||||||| | |||||||| ||||  ||||||||| ||||||||    
T  20710023 tagcggaatttgaacaaatcgctattgttctgcaatacgctatttagtgcaaagtgt 20709967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 414 - 470
Target Start/End: Complemental strand, 32427179 - 32427123
Alignment:
Q  414 tagcagaatttgaacaaatcgtttttgttctgaaatattctatttagtacaaagtgt 470  Q
    |||||||||||||||||| | || |||||| | ||||| ||| ||||||||||||||    
T  32427179 tagcagaatttgaacaaaccattattgttccgcaatatgctaattagtacaaagtgt 32427123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 480
Target Start/End: Original strand, 34417810 - 34417882
Alignment:
Q  409 tagcatagcagaatttg-aacaaatcgtttttgttctgaaatattctatttagtacaaagtgtcgttaaatag 480  Q
    ||||||||||||||||| ||||||| | | ||||||||  ||  ||||||||||||||||||| || ||||||    
T  34417810 tagcatagcagaatttggaacaaatagctattgttctgcgatcctctatttagtacaaagtgttgtcaaatag 34417882  T

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