View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5263-Insertion-2 (Length: 377)
Name: NF5263-Insertion-2
Description: NF5263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5263-Insertion-2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 377
Target Start/End: Complemental strand, 13990446 - 13990094
Alignment:
| Q |
14 |
tcccgtaatgaagtcaataaagacttacctaaaaacgtaccct-ctgatgtgatagtattaagacttgattggtaatggtaagataaagcttttgcagcc |
112 |
Q |
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| T |
13990446 |
tcccgtaatgaagtcaataaagacttacctaaaaacgtacccttctggtgtgatagtattaagacttgattggtaatggtaagataaagcttttgcagcc |
13990347 |
T |
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| Q |
113 |
ttatttggaacaacatttctg-aaatttactacacataataattgaacatatccatcctcaccttattcttgttgtacattagtcaatacagggactttt |
211 |
Q |
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| T |
13990346 |
ttatttggaacaacatttctgaaaatttactacacataataattgaacatatccatcctcaccttattcttgttgtacattagtcaataca-ggac-ttt |
13990249 |
T |
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| Q |
212 |
agtcaaaaggttnnnnnnnnntgtgcacgaaataaaatttggtccaacaaaatttagtaaaatcaaaacactttttctgtc-aagtgaaatcccaccaag |
310 |
Q |
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| T |
13990248 |
agtc-aaaggtt-aaaaaaaatgtgcacgaa--taaatttggccaaacaaa--ttagtaaaatc-aaacac-ttttctgtcaaagtgaa--tccaccaag |
13990159 |
T |
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| Q |
311 |
gtcaggccctagtgaacaagtggatctttatacgtatattcttatctttttctttattttattacta |
377 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
13990158 |
gtca-gccctagtgaacaagt-gatctttatacgtatattcttctctttttctttattttattacta |
13990094 |
T |
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