View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5263-Insertion-3 (Length: 253)
Name: NF5263-Insertion-3
Description: NF5263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5263-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 10 - 174
Target Start/End: Original strand, 15924637 - 15924801
Alignment:
| Q |
10 |
caaggagttgttttggttcttccaggtccagaagatgatgatggtaacaatggaagaatgataaaagtttcattgccagggaaagaacttgaccagttga |
109 |
Q |
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| T |
15924637 |
caaggagttgttttggtttttccaggtccagaagatgatgatggtaacaatggaagaatgataaaagtttcattgccagggaaagaacttgaccagttga |
15924736 |
T |
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| Q |
110 |
aatataagcttgaaagagaatggggtatacaacattatccaagtctaccattttaattttatgaa |
174 |
Q |
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| T |
15924737 |
aatataagcttgaaagagaatggggtatacaacattatgcaagtctaacattttaattttatgaa |
15924801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 13116456 - 13116586
Alignment:
| Q |
11 |
aaggagttgttttggttcttccaggtccagaagatgatgatggtaacaatggaagaatgataaaagtttcattgccagggaaagaacttgaccagttgaa |
110 |
Q |
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| T |
13116456 |
aaggagttgttttggttcttccaggaccagaagatactgatggtaataatggaaggatgataacagtttcattgccaggaaaagaacttgaccagctgaa |
13116555 |
T |
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| Q |
111 |
atataagcttgaaagagaatggggtatacaa |
141 |
Q |
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| T |
13116556 |
atgtaaactagcaggagaattgggaatacaa |
13116586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 141
Target Start/End: Original strand, 46011587 - 46011718
Alignment:
| Q |
10 |
caaggagttgttttggttcttccaggtccagaagatgatgatggtaacaatggaagaatgataaaagtttcattgccagggaaagaacttgaccagttga |
109 |
Q |
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| T |
46011587 |
caaggagttgttttggttctttcaggaccagaagattacaatggtaataatggaaggatggtaacaatttctttacctgggaaagaacttgaccaattga |
46011686 |
T |
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| Q |
110 |
aatataagcttgaaagagaatggggtatacaa |
141 |
Q |
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| T |
46011687 |
aatgtaaactagcacaagaatgggatatacaa |
46011718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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