View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5263_high_3 (Length: 439)
Name: NF5263_high_3
Description: NF5263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5263_high_3 |
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| [»] scaffold0061 (1 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 426
Target Start/End: Complemental strand, 29505744 - 29505336
Alignment:
| Q |
18 |
tttcctactttgttacttccacttttatggtttaaccgaatcatgaaaacttttagccttgggatggttgctttattaactgctgaaattcattaaccat |
117 |
Q |
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|||||||||| |||| || ||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||| ||||| |||||||| |
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| T |
29505744 |
tttcctacttagttagtttcacttttatggtttaactgaatcatgaaaacttttagcaatgggatagttgctttattaactgctgtaattcgttaaccat |
29505645 |
T |
|
| Q |
118 |
gtgactgttgatatatgtgtaactaaaggttttctacaatttgtattgcatttctctatgttcaa-aatctgtcatcaaagacagtatcaatctcataat |
216 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29505644 |
gtgactgttgatatatgtgtaactaaacattttctacaatttgtattgcatttctcaatgttcaataatctgtcatcaaagacagtatcaatctcataat |
29505545 |
T |
|
| Q |
217 |
atatgtcaccgttgttttcatagttgaattaatctatacatatcacatgtcctgatcaaatgattagttactggtttttattattttttcatgcactaaa |
316 |
Q |
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||| ||| ||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| || |||| | ||||||| || |||||| |
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| T |
29505544 |
atacatcatcgtagttttcatagtcaagttaatctatacatatcacatgtcctgatcaaatgattagttacttgtgttta-tgttttttcttgtactaaa |
29505446 |
T |
|
| Q |
317 |
attgcactgatttgatgacatttcgaagtactaaaattaattcttatttttgcaggatctcgtattcctaaagcatgggatgattacattgtttgctgtt |
416 |
Q |
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||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || || |
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| T |
29505445 |
attgcactgattttatgacattttcaagtactaaaattaattcttatttttgcaggatctcgtattcctaaagcatgggatgattacatcgttttctatt |
29505346 |
T |
|
| Q |
417 |
atagaataat |
426 |
Q |
| |
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|||||||||| |
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| T |
29505345 |
atagaataat |
29505336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 123 - 253
Target Start/End: Original strand, 44614594 - 44614725
Alignment:
| Q |
123 |
tgttgatatatgtgtaactaaaggttttctacaatttgtattgcatttctctatgttcaa-aatctgtcatcaaagacagtatcaatctcataatatatg |
221 |
Q |
| |
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||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||| ||||| ||| ||||||| ||||||||||||||||||| |
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| T |
44614594 |
tgttgatatatgtgtaactaaagcatttctataatttgtattgcatttctcactgttcaataatcttccattaaagacaatatcaatctcataatatata |
44614693 |
T |
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| Q |
222 |
tcaccgttgttttcatagttgaattaatctat |
253 |
Q |
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||| ||||||||||||||| | ||||||||| |
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| T |
44614694 |
tcattgttgttttcatagttaagttaatctat |
44614725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 123 - 253
Target Start/End: Complemental strand, 44793975 - 44793844
Alignment:
| Q |
123 |
tgttgatatatgtgtaactaaaggttttctacaatttgtattgcatttctctatgttcaa-aatctgtcatcaaagacagtatcaatctcataatatatg |
221 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||| ||||| ||| ||||||| ||||||||||||||||||| |
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| T |
44793975 |
tgttgatatatgtgtaactaaagcatttctataatttgtattgcatttctcactgttcaataatcttccattaaagacaatatcaatctcataatatata |
44793876 |
T |
|
| Q |
222 |
tcaccgttgttttcatagttgaattaatctat |
253 |
Q |
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||| ||||||||||||||| | ||||||||| |
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| T |
44793875 |
tcattgttgttttcatagttaagttaatctat |
44793844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 343 - 426
Target Start/End: Complemental strand, 44783614 - 44783532
Alignment:
| Q |
343 |
agtactaaaattaattcttatttttgcaggatctcgtattcctaaagcatgggatgattacattgtttgctgttatagaataat |
426 |
Q |
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| T |
44783614 |
agtactaaaattaattcttatttttgcaggatctcat-ttcctactgtatgggaggattacattgcttgctgttatagaataat |
44783532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 44783884 - 44783806
Alignment:
| Q |
40 |
ttttatggtttaaccgaatcatgaaaacttttagcctt-gggatggttgctttattaactgctgaaattcattaaccat |
117 |
Q |
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|
|||||||||||||| ||||||| || |||||||||||| ||||| ||||||||||||||| |||||||||||| ||||| |
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| T |
44783884 |
ttttatggtttaactgaatcataaatacttttagcctttgggatagttgctttattaactactgaaattcatttaccat |
44783806 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 295
Target Start/End: Complemental strand, 44783694 - 44783626
Alignment:
| Q |
227 |
gttgttttcatagttgaattaatctatacatatcacatgtcctgatcaaatgattagttactggttttt |
295 |
Q |
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||||||||||||||| | ||||| ||||||||||||||||| |||| |||| |||||||||| |||||| |
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| T |
44783694 |
gttgttttcatagttaagttaatttatacatatcacatgtcttgattaaattattagttacttgttttt |
44783626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 297
Target Start/End: Complemental strand, 11542579 - 11542418
Alignment:
| Q |
133 |
tgtgtaactaaaggttttctacaatttgtattgcatttctctatgttcaa-aatctgtcatcaaagacagtatcaatctcataatatatgtcaccgttgt |
231 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||| || |||| || |||||||||||||| |||||||| ||||| ||| ||| | |||| |
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| T |
11542579 |
tgtgtaactaaagcacttcaacaatttgtattgcatttctcagtgatcaataacatgtcatcaaagacaatatcaatcccataacctatatcatcattgt |
11542480 |
T |
|
| Q |
232 |
tttcatagttgaattaatctatacatatcacatgtcctg-atcaaatgattagttactggtttttat |
297 |
Q |
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|| ||| | |||||||| |||| |||||||||||| || || ||||||||||| |||||||| |
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| T |
11542479 |
tt-----gttaagttaatctagacatgtcacatgtcctgaataaattgattagttacatgtttttat |
11542418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 122
Target Start/End: Complemental strand, 11542671 - 11542609
Alignment:
| Q |
60 |
atgaaaacttttagccttgggatggttgctttattaactgctgaaattcattaaccatgtgac |
122 |
Q |
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||||| |||||||||||||| || ||||||| ||||||| | |||||||||||| ||| |||| |
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| T |
11542671 |
atgaagacttttagccttggtatagttgcttaattaactaccgaaattcattaatcatatgac |
11542609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 121 - 220
Target Start/End: Complemental strand, 27269 - 27169
Alignment:
| Q |
121 |
actgttgatatatgtgtaactaaaggttttctacaatttgtattgcatttctctatgttcaa-aatctgtcatcaaagacagtatcaatctcataatata |
219 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||| || ||||| |||||||||| | ||||||||| |||||||| |
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|
| T |
27269 |
actgttgatatatttgtaactaaagcatttctacaatttgtattgcatttctcagtgtttaataatctttcatcaaagaaaatatcaatcttataatata |
27170 |
T |
|
| Q |
220 |
t |
220 |
Q |
| |
|
| |
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|
| T |
27169 |
t |
27169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 121 - 220
Target Start/End: Original strand, 171523 - 171623
Alignment:
| Q |
121 |
actgttgatatatgtgtaactaaaggttttctacaatttgtattgcatttctctatgttcaa-aatctgtcatcaaagacagtatcaatctcataatata |
219 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||| || ||||| |||||||||| | ||||||||| |||||||| |
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|
| T |
171523 |
actgttgatatatttgtaactaaagcatttctacaatttgtattgcatttctcagtgtttaataatctttcatcaaagaaaatatcaatcttataatata |
171622 |
T |
|
| Q |
220 |
t |
220 |
Q |
| |
|
| |
|
|
| T |
171623 |
t |
171623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 426
Target Start/End: Original strand, 26730285 - 26730398
Alignment:
| Q |
315 |
aaattgcactgatttgatgacatttcgaagtactaaaattaa-ttcttatttttgcaggatctcgtattcctaaagcatgggatgattaca-ttgtttgc |
412 |
Q |
| |
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||||||||||| ||||||| ||||| |||||||||| |||| || ||| |||||||||||||| ||||| | | ||||||||||| || || ||||| |
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| T |
26730285 |
aaattgcactgctttgatgttatttccaagtactaaatttaattttttacttttgcaggatctcttattcgttctgtatgggatgattgcatttttttgc |
26730384 |
T |
|
| Q |
413 |
tgttatagaataat |
426 |
Q |
| |
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|||| ||||||||| |
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|
| T |
26730385 |
tgttgtagaataat |
26730398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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