View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5263_high_5 (Length: 369)

Name: NF5263_high_5
Description: NF5263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5263_high_5
NF5263_high_5
[»] chr4 (22 HSPs)
chr4 (15-334)||(44924784-44925102)
chr4 (15-88)||(6908811-6908884)
chr4 (251-332)||(35748551-35748632)
chr4 (248-332)||(31092390-31092474)
chr4 (15-111)||(6901367-6901464)
chr4 (255-328)||(22787278-22787351)
chr4 (252-332)||(32871717-32871797)
chr4 (252-329)||(32058263-32058340)
chr4 (252-332)||(12592943-12593023)
chr4 (259-328)||(44121120-44121189)
chr4 (249-311)||(45511442-45511504)
chr4 (283-329)||(52378959-52379005)
chr4 (251-332)||(10376130-10376211)
chr4 (251-332)||(54221944-54222025)
chr4 (15-70)||(44927234-44927289)
chr4 (256-314)||(12706286-12706344)
chr4 (256-329)||(32556489-32556563)
chr4 (252-332)||(51377180-51377261)
chr4 (259-332)||(52697584-52697656)
chr4 (252-320)||(1015092-1015160)
chr4 (247-275)||(11493242-11493270)
chr4 (252-328)||(16531832-16531908)
[»] chr3 (14 HSPs)
chr3 (15-88)||(202101-202174)
chr3 (250-332)||(38017806-38017888)
chr3 (15-111)||(206925-207022)
chr3 (252-332)||(47187408-47187488)
chr3 (256-332)||(38910491-38910567)
chr3 (256-332)||(6977017-6977093)
chr3 (251-333)||(37073760-37073842)
chr3 (259-329)||(39901693-39901763)
chr3 (252-332)||(34102964-34103044)
chr3 (253-329)||(41851047-41851123)
chr3 (253-332)||(41448071-41448150)
chr3 (250-329)||(48335318-48335397)
chr3 (250-332)||(9326871-9326953)
chr3 (242-299)||(19961921-19961978)
[»] chr1 (15 HSPs)
chr1 (17-96)||(29514286-29514365)
chr1 (253-332)||(43891666-43891745)
chr1 (252-318)||(40809604-40809670)
chr1 (255-332)||(49804826-49804903)
chr1 (253-332)||(28501550-28501628)
chr1 (15-93)||(43625995-43626074)
chr1 (251-328)||(27804719-27804796)
chr1 (248-329)||(12021781-12021864)
chr1 (256-332)||(51231199-51231274)
chr1 (248-332)||(3904285-3904369)
chr1 (261-328)||(35883504-35883571)
chr1 (252-323)||(38519880-38519951)
chr1 (249-277)||(2533236-2533264)
chr1 (259-329)||(34453371-34453440)
chr1 (257-332)||(50777315-50777391)
[»] chr8 (12 HSPs)
chr8 (251-327)||(14127354-14127430)
chr8 (254-332)||(37568399-37568477)
chr8 (256-325)||(39199887-39199956)
chr8 (253-329)||(1775414-1775490)
chr8 (253-329)||(4721835-4721911)
chr8 (252-332)||(26628997-26629077)
chr8 (252-332)||(33938368-33938448)
chr8 (252-323)||(37521971-37522042)
chr8 (280-329)||(3155929-3155978)
chr8 (252-329)||(28434548-28434625)
chr8 (259-332)||(30170627-30170700)
chr8 (251-328)||(43066481-43066558)
[»] chr7 (23 HSPs)
chr7 (253-332)||(47925440-47925519)
chr7 (252-332)||(11503465-11503545)
chr7 (269-332)||(49094641-49094704)
chr7 (251-331)||(6427316-6427395)
chr7 (252-314)||(6892522-6892584)
chr7 (259-332)||(2005657-2005731)
chr7 (255-329)||(7714730-7714804)
chr7 (253-331)||(48314254-48314332)
chr7 (251-332)||(22588848-22588929)
chr7 (253-332)||(16829573-16829652)
chr7 (252-332)||(48395345-48395425)
chr7 (289-328)||(8352882-8352921)
chr7 (253-332)||(16953999-16954078)
chr7 (259-329)||(37855085-37855155)
chr7 (256-298)||(45606953-45606995)
chr7 (291-328)||(2849446-2849483)
chr7 (15-48)||(24652658-24652691)
chr7 (268-329)||(24957097-24957158)
chr7 (250-323)||(41750217-41750290)
chr7 (259-332)||(42663310-42663383)
chr7 (251-332)||(45256618-45256699)
chr7 (253-329)||(7212552-7212628)
chr7 (280-332)||(23816384-23816436)
[»] chr6 (7 HSPs)
chr6 (252-332)||(11113902-11113982)
chr6 (257-332)||(10840821-10840896)
chr6 (261-332)||(20029362-20029433)
chr6 (251-334)||(31204697-31204780)
chr6 (284-329)||(38700-38743)
chr6 (252-329)||(25109149-25109226)
chr6 (259-328)||(34019824-34019893)
[»] chr2 (19 HSPs)
chr2 (254-332)||(14151652-14151730)
chr2 (253-329)||(40106704-40106780)
chr2 (253-334)||(9366017-9366098)
chr2 (251-332)||(31629707-31629788)
chr2 (248-328)||(13453839-13453919)
chr2 (252-332)||(40602273-40602354)
chr2 (251-332)||(30416466-30416547)
chr2 (256-332)||(30415117-30415193)
chr2 (252-313)||(39233641-39233702)
chr2 (252-329)||(45376107-45376184)
chr2 (283-329)||(28544129-28544175)
chr2 (259-323)||(43820636-43820700)
chr2 (257-332)||(15123825-15123900)
chr2 (253-328)||(22966893-22966968)
chr2 (255-332)||(15610725-15610802)
chr2 (259-332)||(32900221-32900294)
chr2 (259-332)||(34432392-34432465)
chr2 (244-277)||(37966358-37966391)
chr2 (258-314)||(37468158-37468214)
[»] chr5 (9 HSPs)
chr5 (256-332)||(5740449-5740525)
chr5 (252-332)||(35474483-35474563)
chr5 (251-329)||(35570916-35570994)
chr5 (248-332)||(5899770-5899854)
chr5 (253-329)||(26754527-26754603)
chr5 (251-325)||(4800387-4800461)
chr5 (259-329)||(35475920-35475990)
chr5 (252-332)||(844136-844216)
chr5 (252-332)||(30838253-30838333)
[»] scaffold1625 (1 HSPs)
scaffold1625 (252-327)||(669-744)
[»] scaffold0295 (2 HSPs)
scaffold0295 (252-332)||(6031-6111)
scaffold0295 (252-332)||(3546-3626)


Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 15 - 334
Target Start/End: Original strand, 44924784 - 44925102
Alignment:
Q  15 aggatgggatgttcaccacctgcctcccaaccctatgaaaccaaaaatgacattatcatccattcccaaacatatttcattaatactaaatagaaagnnn 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  44924784 aggatgggatgttcaccacctgcctcccaaccctatgaaaccaaaaatgacattatcatccattcccaaacatatttcattaatactaaatagaaagaaa 44924883  T
Q  115 nnnnnnttaaacaaaactctagggacccataagcatacagcaagtgaaaaatataattgaggatctattcaaagttaagtaaagaaataatctctacatt 214  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44924884 aaaaa-ttaaacaaaactctagggacccataagcatacagcaagtgaaaaatataattgaggatctattcaaagttaagtaaagaaataatctctacatt 44924982  T
Q  215 tctcttttatttcgttcacactaacaagtatagttttagaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctctt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  ||||||||||||||    
T  44924983 tctcttttatttcgttcacactaacaagtatagttttagaggaatgatatttgtacaactaatcctagacaacttttgtgacaattacttttcctctctt 44925082  T
Q  315 cttattggataaaaacaaca 334  Q
    ||||||||||||||||||||    
T  44925083 cttattggataaaaacaaca 44925102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 6908811 - 6908884
Alignment:
Q  15 aggatgggatgttcaccacctgcctcccaaccctatgaaaccaaaaatgacattatcatccattcccaaacata 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6908811 aggatgggatgttcaccacctgcctcccaaccctatgaaaccaaaaatgacattatcatccattcccaaacata 6908884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 251 - 332
Target Start/End: Original strand, 35748551 - 35748632
Alignment:
Q  251 tagaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    |||||||||||||||| ||| | ||||| |||||||||||||||||||| ||||||||||| |||||| |||||||||||||    
T  35748551 tagaggaatgatatttctacgatcaatcttagacaatttttgtgacaactacttttcctcttttcttaatggataaaaacaa 35748632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 248 - 332
Target Start/End: Original strand, 31092390 - 31092474
Alignment:
Q  248 ttttagaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    |||||||| |||||||||||||||| ||||| |||| || ||||||||||| |||||||||||| |||||||| |||||||||||    
T  31092390 ttttagagaaatgatatttgtacaatcaatcttagaaaacttttgtgacaatcacttttcctcttttcttattagataaaaacaa 31092474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 6901464 - 6901367
Alignment:
Q  15 aggatgggatgttcaccacctgcctcccaaccctatgaaacca-aaaatgacattatcatccattcccaaacatatttcattaatactaaatagaaag 111  Q
    ||||||||||||| || |||||||||||||| ||||||||||| ||||| |||||||||||||| |||| |||||||| |  || |||||||||||||    
T  6901464 aggatgggatgttaacaacctgcctcccaactctatgaaaccaaaaaataacattatcatccatgcccagacatatttgaacaagactaaatagaaag 6901367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 255 - 328
Target Start/End: Complemental strand, 22787351 - 22787278
Alignment:
Q  255 ggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaa 328  Q
    |||||||||||||||||||| ||  || |||||||||| |||||||| |||| |||||||||||||||||||||    
T  22787351 ggaatgatatttgtacaacctattttaaacaatttttgagacaaccattttttctctcttcttattggataaaa 22787278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 252 - 332
Target Start/End: Original strand, 32871717 - 32871797
Alignment:
Q  252 agaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    |||||| ||||||||||||| ||||| || ||||| | || |||||| ||||||||||||||| |||||||||||||||||    
T  32871717 agaggagtgatatttgtacatccaattcttgacaactcttttgacaatcacttttcctctctttttattggataaaaacaa 32871797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 252 - 329
Target Start/End: Original strand, 32058263 - 32058340
Alignment:
Q  252 agaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaa 329  Q
    |||||| |||||||||||||| | ||  || |||| ||||| |||||||| |||||||||||||||||||||||||||    
T  32058263 agaggagtgatatttgtacaatccattttaaacaacttttgagacaaccatttttcctctcttcttattggataaaaa 32058340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 252 - 332
Target Start/End: Original strand, 12592943 - 12593023
Alignment:
Q  252 agaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    ||||||||||||||| |||||| |||| |  |||| || ||||| || || ||||||||||||||||||||||||||||||    
T  12592943 agaggaatgatatttatacaactaatcttgaacaacttgtgtgataatcatttttcctctcttcttattggataaaaacaa 12593023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 328
Target Start/End: Original strand, 44121120 - 44121189
Alignment:
Q  259 tgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaa 328  Q
    |||||||||||||||  ||  || |||| ||||| |||||||| ||||||||||||||||||||||||||    
T  44121120 tgatatttgtacaactcattttaaacaacttttgagacaaccatttttcctctcttcttattggataaaa 44121189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 311
Target Start/End: Complemental strand, 45511504 - 45511442
Alignment:
Q  249 tttagaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctct 311  Q
    ||||||||| ||||||||||||| |||||  || |||| |||||||||| |||||||||||||    
T  45511504 tttagaggagtgatatttgtacatccaattttaaacaacttttgtgacatccacttttcctct 45511442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 329
Target Start/End: Original strand, 52378959 - 52379005
Alignment:
Q  283 acaatttttgtgacaaccacttttcctctcttcttattggataaaaa 329  Q
    |||| ||||||||||||||||||| ||||||| ||||||||||||||    
T  52378959 acaacttttgtgacaaccactttttctctctttttattggataaaaa 52379005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 10376211 - 10376130
Alignment:
Q  251 tagaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    ||||||| |||||||||||||||||||  || |||||| |||| ||||||| |||||  ||||| ||||||||  |||||||    
T  10376211 tagaggagtgatatttgtacaaccaattgtatacaattcttgtaacaaccatttttctcctctttttattggactaaaacaa 10376130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 332
Target Start/End: Original strand, 54221944 - 54222025
Alignment:
Q  251 tagaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    ||||||| ||||||||||||||| |||  ||||||| ||| |||||||| | ||||| |||||| | |||||| ||||||||    
T  54221944 tagaggagtgatatttgtacaactaatattagacaactttggtgacaactatttttcttctcttgtgattggacaaaaacaa 54222025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 44927234 - 44927289
Alignment:
Q  15 aggatgggatgttcaccacctgcctcccaaccctatgaaaccaaaaatgacattat 70  Q
    ||||||||||||| || ||||||||||||||||| ||||| |||||  ||||||||    
T  44927234 aggatgggatgttaacaacctgcctcccaaccctgtgaaagcaaaagcgacattat 44927289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 314
Target Start/End: Complemental strand, 12706344 - 12706286
Alignment:
Q  256 gaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctctt 314  Q
    ||||||||||||||||||||||  || ||| ||||| ||||||||  ||||||||||||    
T  12706344 gaatgatatttgtacaaccaattttaaacattttttatgacaaccttttttcctctctt 12706286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 329
Target Start/End: Original strand, 32556489 - 32556563
Alignment:
Q  256 gaatgatatttgtacaaccaatcctag-acaatttttgtgacaaccacttttcctctcttcttattggataaaaa 329  Q
    |||||||||||||| |||||||  | | | || |||||||| |||||||||| ||||||| ||||||||||||||    
T  32556489 gaatgatatttgtataaccaatttttgtataacttttgtgataaccactttttctctctttttattggataaaaa 32556563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 332
Target Start/End: Original strand, 51377180 - 51377261
Alignment:
Q  252 agaggaatgatatttgtacaaccaatcctagacaatttttgtgacaacc-acttttcctctcttcttattggataaaaacaa 332  Q
    |||| ||||||||||||||| ||| |||| ||||| ||| |||||||||   |||| |||||||||||||||  ||||||||    
T  51377180 agagcaatgatatttgtacatccattccttgacaactttagtgacaaccttgtttttctctcttcttattggtcaaaaacaa 51377261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 332
Target Start/End: Complemental strand, 52697656 - 52697584
Alignment:
Q  259 tgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    |||||||||||||||||||  || ||||| ||||||||||| | |||| |||| || |||||| ||||||||||    
T  52697656 tgatatttgtacaaccaattttaaacaatctttgtgacaacta-tttttctctatttttattgaataaaaacaa 52697584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 320
Target Start/End: Complemental strand, 1015160 - 1015092
Alignment:
Q  252 agaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttatt 320  Q
    |||| |||||||||||||||||||||  |  ||||  |||||| ||||||||||| |||| ||||||||    
T  1015160 agagaaatgatatttgtacaaccaattttgtacaacctttgtggcaaccactttttctctattcttatt 1015092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 275
Target Start/End: Complemental strand, 11493270 - 11493242
Alignment:
Q  247 gttttagaggaatgatatttgtacaacca 275  Q
    |||||||||||||||||||||||||||||    
T  11493270 gttttagaggaatgatatttgtacaacca 11493242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 328
Target Start/End: Original strand, 16531832 - 16531908
Alignment:
Q  252 agaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaa 328  Q
    |||| |||||||| |||||||  |||  || |||||||||||||||||||||||||   |||| |||||||| ||||    
T  16531832 agagaaatgatatctgtacaattaattttaaacaatttttgtgacaaccacttttctcttctttttattggacaaaa 16531908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 202174 - 202101
Alignment:
Q  15 aggatgggatgttcaccacctgcctcccaaccctatgaaaccaaaaatgacattatcatccattcccaaacata 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  202174 aggatgggatgttcaccacctgcctcccaaccctatgaaaccaaaaatgacattatcatccattcccaaacata 202101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 250 - 332
Target Start/End: Original strand, 38017806 - 38017888
Alignment:
Q  250 ttagaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    ||||||||||||||||||| | | ||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  38017806 ttagaggaatgatatttgtccgatcaatcttagacaatttttgtgacaatcactttttctctcttcttattggataaaaacaa 38017888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 206925 - 207022
Alignment:
Q  15 aggatgggatgttcaccacctgcctcccaaccctatgaaacc-aaaaatgacattatcatccattcccaaacatatttcattaatactaaatagaaag 111  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||| |||| |||||||| |  || |||||||||||||    
T  206925 aggatgggatgttcacaacctgcctcccaaccctatgaaaccaaaaaataacattatcatccatgcccagacatatttgaacaagactaaatagaaag 207022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 252 - 332
Target Start/End: Original strand, 47187408 - 47187488
Alignment:
Q  252 agaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    |||||||||||||||||||||  ||| ||| |||| |||||||||||||||||||| |||||||||| |||||||||||||    
T  47187408 agaggaatgatatttgtacaattaattctaaacaacttttgtgacaaccacttttcatctcttcttactggataaaaacaa 47187488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 256 - 332
Target Start/End: Original strand, 38910491 - 38910567
Alignment:
Q  256 gaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    ||||||||||||||||||||||  || | ||||||||||||||    ||||||||| ||||||||||||||||||||    
T  38910491 gaatgatatttgtacaaccaattttaaataatttttgtgacaatattttttcctctattcttattggataaaaacaa 38910567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 256 - 332
Target Start/End: Complemental strand, 6977093 - 6977017
Alignment:
Q  256 gaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    |||||||||||||||||  |||| |  |||| |||||||| || || ||||||||| ||||||||||||||||||||    
T  6977093 gaatgatatttgtacaataaatcttgaacaacttttgtgataatcatttttcctcttttcttattggataaaaacaa 6977017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 333
Target Start/End: Complemental strand, 37073842 - 37073760
Alignment:
Q  251 tagaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaac 333  Q
    ||||||||||||||||||||||| |||  |||| |||||| ||||  | ||||||||  ||||| |||||||| |||||||||    
T  37073842 tagaggaatgatatttgtacaactaatattagataattttggtgatcatcacttttctgctcttgttattggacaaaaacaac 37073760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 39901763 - 39901693
Alignment:
Q  259 tgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaa 329  Q
    |||||| |||||| |||||  || |||| ||| ||| ||||||||||| ||||||||||||||||||||||    
T  39901763 tgatatatgtacatccaattttaaacaactttggtggcaaccactttttctctcttcttattggataaaaa 39901693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 332
Target Start/End: Original strand, 34102964 - 34103044
Alignment:
Q  252 agaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    ||||||||||||||| || || ||||  || ||||||||||||||||| |||||| ||||||| ||| || | ||||||||    
T  34102964 agaggaatgatatttatataatcaattttaaacaatttttgtgacaactactttttctctctttttaatgaacaaaaacaa 34103044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 41851123 - 41851047
Alignment:
Q  253 gaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaa 329  Q
    |||||||| ||||| ||||||||||   | |||| |||| ||||||||||||||||| |||| ||||| ||||||||    
T  41851123 gaggaatgttatttatacaaccaattgcaaacaaattttatgacaaccacttttcctttctttttattagataaaaa 41851047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 332
Target Start/End: Original strand, 41448071 - 41448150
Alignment:
Q  253 gaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    ||||||||||||||  |||| ||||  ||||||| ||||||||||| || |||| ||||||| |||| ||| ||||||||    
T  41448071 gaggaatgatatttacacaatcaattttagacaacttttgtgacaatcattttttctctctttttatcggacaaaaacaa 41448150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 329
Target Start/End: Complemental strand, 48335397 - 48335318
Alignment:
Q  250 ttagaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaa 329  Q
    |||||| | ||||||||||||| ||||   ||||||| |||||||| || ||||||| || |||| ||||||||||||||    
T  48335397 ttagagaagtgatatttgtacatccaactttagacaacttttgtgataatcactttttctttctttttattggataaaaa 48335318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 332
Target Start/End: Original strand, 9326871 - 9326953
Alignment:
Q  250 ttagaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    |||||||| |||||||||||||   |||  ||||||| ||| ||||||||||||||||  ||||| | |||||| ||||||||    
T  9326871 ttagaggattgatatttgtacatataatattagacaactttggtgacaaccacttttctcctcttgtgattggaaaaaaacaa 9326953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 299
Target Start/End: Original strand, 19961921 - 19961978
Alignment:
Q  242 gtatagttttagaggaatgatatttgtacaaccaatcctagacaatttttgtgacaac 299  Q
    |||||||  ||||| ||||||||||| ||||||| |  ||||||||||||||||||||    
T  19961921 gtatagtagtagagaaatgatatttgaacaaccacttttagacaatttttgtgacaac 19961978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 29514365 - 29514286
Alignment:
Q  17 gatgggatgttcaccacctgcctcccaaccctatgaaaccaaaaatgacattatcatccattcccaaacatatttcatta 96  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29514365 gatgggatgttcacaacctgcctcccaaccctgtgaaaccaaaaatgacattatcatccattcccaaacatatttcatta 29514286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 253 - 332
Target Start/End: Original strand, 43891666 - 43891745
Alignment:
Q  253 gaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    |||||| |||||||||||||||||||||| |||| ||||||||||  |||||||||||||||||||||| ||||||||||    
T  43891666 gaggaacgatatttgtacaaccaatcctaaacaacttttgtgacagtcacttttcctctcttcttattgaataaaaacaa 43891745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 40809670 - 40809604
Alignment:
Q  252 agaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttctta 318  Q
    |||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||    
T  40809670 agaggaatgatatttgtacaaccaatcctaaacaactattgtgacaaccacttttcctctcttctta 40809604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 255 - 332
Target Start/End: Original strand, 49804826 - 49804903
Alignment:
Q  255 ggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    ||||||||||||||||||||||| ||| | || |||||| |||||||||||||||||||| |||||||||||||||||    
T  49804826 ggaatgatatttgtacaaccaattctaaataacttttgtaacaaccacttttcctctctttttattggataaaaacaa 49804903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 253 - 332
Target Start/End: Complemental strand, 28501628 - 28501550
Alignment:
Q  253 gaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    ||||||||||||||||||||||||||||| |||| |||||||| || || ||||||| |||| |||||||||||||||||    
T  28501628 gaggaatgatatttgtacaaccaatcctaaacaacttttgtgataatcatttttcctttctt-ttattggataaaaacaa 28501550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 43626074 - 43625995
Alignment:
Q  15 aggatgggatgttcaccacctgcctcccaaccctatgaaa-ccaaaaatgacattatcatccattcccaaacatatttca 93  Q
    ||||||||||||| || |||||||||| |||||||||||| | ||||||||||||||||||||| ||||||| |||||||    
T  43626074 aggatgggatgttaacaacctgcctcctaaccctatgaaatcaaaaaatgacattatcatccatccccaaacgtatttca 43625995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 27804719 - 27804796
Alignment:
Q  251 tagaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaa 328  Q
    ||||||| |||||||||||||||||||  || ||||| |||||||||||||||||| |||| || |||||||| ||||    
T  27804719 tagaggagtgatatttgtacaaccaattttacacaatctttgtgacaaccactttttctctatttttattggacaaaa 27804796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 12021781 - 12021864
Alignment:
Q  248 ttttagaggaatgatatttgtacaaccaatcctagacaatttttgtgacaacc--acttttcctctcttcttattggataaaaa 329  Q
    |||| |||||||||||||||||||||||||| | || || || || |||||||  | |||||||||||| ||||||||||||||    
T  12021781 tttttgaggaatgatatttgtacaaccaatcttggataaattgtgcgacaaccataattttcctctctttttattggataaaaa 12021864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 256 - 332
Target Start/End: Original strand, 51231199 - 51231274
Alignment:
Q  256 gaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    |||| ||||||||||||||||| ||||| |||||||| | ||||||||||| |||| || ||| |||||||||||||    
T  51231199 gaattatatttgtacaaccaattctagataatttttgagtcaaccactttttctct-tttttaatggataaaaacaa 51231274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 332
Target Start/End: Complemental strand, 3904369 - 3904285
Alignment:
Q  248 ttttagaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    |||||||||| ||||||||||||||| ||   |||||||||||  ||||||||| |||||  ||||| | |||||| ||||||||    
T  3904369 ttttagaggagtgatatttgtacaactaaaattagacaattttgatgacaaccaattttctcctcttgtgattggacaaaaacaa 3904285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 328
Target Start/End: Original strand, 35883504 - 35883571
Alignment:
Q  261 atatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaa 328  Q
    |||||||||||||||||  |  ||||  |||||||||||||||||| ||||||| |||||||| ||||    
T  35883504 atatttgtacaaccaattttgtacaacctttgtgacaaccactttttctctctttttattggacaaaa 35883571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 323
Target Start/End: Original strand, 38519880 - 38519951
Alignment:
Q  252 agaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattgga 323  Q
    |||||| |||||||||||||||||||  || | ||| |||||||||| ||||||| || | |||||||||||    
T  38519880 agaggagtgatatttgtacaaccaattttatataatctttgtgacaatcactttttctttattcttattgga 38519951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 2533236 - 2533264
Alignment:
Q  249 tttagaggaatgatatttgtacaaccaat 277  Q
    |||||||||||||||||||||||||||||    
T  2533236 tttagaggaatgatatttgtacaaccaat 2533264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 34453371 - 34453440
Alignment:
Q  259 tgatatttgtacaaccaatcctag-acaatttttgtgacaaccacttttcctctcttcttattggataaaaa 329  Q
    |||||||| ||||||||||  | | |||||||||||||||||||||||  ||||||  ||||||||||||||    
T  34453371 tgatatttatacaaccaatttttgtacaatttttgtgacaaccacttt--ctctctatttattggataaaaa 34453440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 332
Target Start/End: Original strand, 50777315 - 50777391
Alignment:
Q  257 aatgatatttgtacaaccaatcctagacaatttttgtgacaaccac-ttttcctctcttcttattggataaaaacaa 332  Q
    ||||||||||||||| |||||    ||||||||| |||||||||   |||| ||||||||||||||| |||||||||    
T  50777315 aatgatatttgtacatccaattgatgacaattttggtgacaaccttgtttttctctcttcttattggttaaaaacaa 50777391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 7e-31; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 14127430 - 14127354
Alignment:
Q  251 tagaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaa 327  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  14127430 tagaggaatgatatttgtacaaccaatcctaaacaacttttgtgacaaccacttttcctctcttcttattggataaa 14127354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 254 - 332
Target Start/End: Original strand, 37568399 - 37568477
Alignment:
Q  254 aggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    ||||||||||||||||||||||| | ||||||| |||||||||||||| ||||| ||| |||||||| |||||||||||    
T  37568399 aggaatgatatttgtacaaccaagcttagacaacttttgtgacaaccatttttcatctattcttattcgataaaaacaa 37568477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 256 - 325
Target Start/End: Original strand, 39199887 - 39199956
Alignment:
Q  256 gaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggata 325  Q
    ||||||||||||||||||||||| || |||| |||||||||||||||||||| ||| |||||||||||||    
T  39199887 gaatgatatttgtacaaccaatcttaaacaacttttgtgacaaccacttttcttctattcttattggata 39199956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 1775490 - 1775414
Alignment:
Q  253 gaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaa 329  Q
    |||||||||||||||||| ||||||| || |||| |||||||||||||| |||| || |||||||||||||||||||    
T  1775490 gaggaatgatatttgtaccaccaatcttaaacaacttttgtgacaaccattttttctttcttcttattggataaaaa 1775414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 4721911 - 4721835
Alignment:
Q  253 gaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaa 329  Q
    ||||| |||||||||||||||  ||  || |||| ||||| ||||||||||||||||||||||||||||||||||||    
T  4721911 gaggagtgatatttgtacaactcattttaaacaacttttgagacaaccacttttcctctcttcttattggataaaaa 4721835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 252 - 332
Target Start/End: Original strand, 26628997 - 26629077
Alignment:
Q  252 agaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    |||||| |||||||||||||||||||  |  ||||  |||||||||||||||||| || | ||||||||||| ||||||||    
T  26628997 agaggagtgatatttgtacaaccaattttgtacaacatttgtgacaaccactttttctttattcttattggacaaaaacaa 26629077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 332
Target Start/End: Original strand, 33938368 - 33938448
Alignment:
Q  252 agaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    ||||||||||||||| ||||| |||| ||| |||| |||| ||| ||  | |||| |||||||||||| ||||||||||||    
T  33938368 agaggaatgatatttatacaatcaattctatacaacttttatgataattattttttctctcttcttatcggataaaaacaa 33938448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 323
Target Start/End: Original strand, 37521971 - 37522042
Alignment:
Q  252 agaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattgga 323  Q
    |||||||||||||||||| ||  |||  || ||||||||||||||||||| |||| || | |||||||||||    
T  37521971 agaggaatgatatttgtagaattaattttatacaatttttgtgacaaccattttttctttattcttattgga 37522042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 3155978 - 3155929
Alignment:
Q  280 tagacaatttttgtgacaaccacttttcctctcttcttattggataaaaa 329  Q
    ||||||| |||  ||||||||| |||||||| ||||||||||||||||||    
T  3155978 tagacaactttattgacaaccatttttcctcacttcttattggataaaaa 3155929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 329
Target Start/End: Complemental strand, 28434625 - 28434548
Alignment:
Q  252 agaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaa 329  Q
    |||||| |||||||||||||||  ||  || |||| ||||| |||||||| || ||||||||| |||||| |||||||    
T  28434625 agaggagtgatatttgtacaactcattttaaacaacttttgagacaaccatttatcctctctttttattgaataaaaa 28434548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 332
Target Start/End: Original strand, 30170627 - 30170700
Alignment:
Q  259 tgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    ||||||||||||||| |||  ||||||||||| |||||||||| |||||  || || | |||||| ||||||||    
T  30170627 tgatatttgtacaactaattttagacaattttggtgacaaccatttttctccttttgtgattggacaaaaacaa 30170700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 43066481 - 43066558
Alignment:
Q  251 tagaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaa 328  Q
    ||||||| ||||||||||||||| |||  |  ||||| ||||||| | ||| |||| |||||||||||||||| ||||    
T  43066481 tagaggagtgatatttgtacaactaattttgtacaatctttgtgatagccattttttctctcttcttattggacaaaa 43066558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 253 - 332
Target Start/End: Complemental strand, 47925519 - 47925440
Alignment:
Q  253 gaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  47925519 gaggaatgatatttgtacaaccaattctagacaatttttgtgacaaccacttttcctttcttcttatcggataaaaacaa 47925440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 252 - 332
Target Start/End: Original strand, 11503465 - 11503545
Alignment:
Q  252 agaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    ||||||||||||||||||| |||||| ||||| || ||||||||||||||||||| |||||||||| ||||||||||||||    
T  11503465 agaggaatgatatttgtacgaccaattctagaaaacttttgtgacaaccactttttctctcttcttgttggataaaaacaa 11503545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 269 - 332
Target Start/End: Original strand, 49094641 - 49094704
Alignment:
Q  269 acaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  49094641 acaaccaatcctagacaacttttgtgacaaccacttttcctcttttcttattggataaaaacaa 49094704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 251 - 331
Target Start/End: Complemental strand, 6427395 - 6427316
Alignment:
Q  251 tagaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaaca 331  Q
    |||||||||||||||||||||| ||||  ||||||| ||||||||||| |||||||||||||||| | |||||||||||||    
T  6427395 tagaggaatgatatttgtacaatcaattttagacaacttttgtgacaagcacttttcctctcttc-tcttggataaaaaca 6427316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 252 - 314
Target Start/End: Original strand, 6892522 - 6892584
Alignment:
Q  252 agaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctctt 314  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||| |||||| |||||||    
T  6892522 agaggaatgatatttgtacaaccaatcatagacaacttttgtgacaacaactttttctctctt 6892584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 332
Target Start/End: Original strand, 2005657 - 2005731
Alignment:
Q  259 tgatatttgtacaaccaatcctagacaatttt-tgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    |||||||||||||  ||||  ||||||||||| |||||||||||||||||| ||||| |||||||||||||||||    
T  2005657 tgatatttgtacattcaattttagacaattttttgtgacaaccacttttccactctttttattggataaaaacaa 2005731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 329
Target Start/End: Original strand, 7714730 - 7714804
Alignment:
Q  255 ggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaa 329  Q
    |||||| ||||||||||| |||| ||| ||||||||||||||||| | |||| |||||||||||||| |||||||    
T  7714730 ggaatggtatttgtacaatcaattctaaacaatttttgtgacaactattttttctctcttcttattgaataaaaa 7714804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 331
Target Start/End: Original strand, 48314254 - 48314332
Alignment:
Q  253 gaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaaca 331  Q
    |||||||||||||||||||| ||||| || ||||| ||||||||||||| |||  ||||||| ||||||||| ||||||    
T  48314254 gaggaatgatatttgtacaatcaatcttaaacaatctttgtgacaaccattttctctctctttttattggatcaaaaca 48314332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 332
Target Start/End: Original strand, 22588848 - 22588929
Alignment:
Q  251 tagaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    ||||||| ||||||||||||||| |||  ||||||| ||| |||||||||||||||| ||| || | |||||| ||||||||    
T  22588848 tagaggagtgatatttgtacaactaatattagacaactttggtgacaaccacttttcttcttttgtgattggacaaaaacaa 22588929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 332
Target Start/End: Original strand, 16829573 - 16829652
Alignment:
Q  253 gaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    ||||| ||||||||||||||| |||  || |||| ||| ||||||||||||||||  ||||| | |||||||||||||||    
T  16829573 gaggagtgatatttgtacaactaatattaaacaactttggtgacaaccacttttctcctcttgtgattggataaaaacaa 16829652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 332
Target Start/End: Complemental strand, 48395425 - 48395345
Alignment:
Q  252 agaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    |||||| ||||||||||||||| |||  |||||||| || |||||||||||||||| ||| ||   |||||| ||||||||    
T  48395425 agaggattgatatttgtacaactaatattagacaatcttggtgacaaccacttttcttcttttgagattggacaaaaacaa 48395345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 328
Target Start/End: Complemental strand, 8352921 - 8352882
Alignment:
Q  289 tttgtgacaaccacttttcctctcttcttattggataaaa 328  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  8352921 tttgtgacaaccactttttctctcttcttattggacaaaa 8352882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 332
Target Start/End: Complemental strand, 16954078 - 16953999
Alignment:
Q  253 gaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    ||||| ||||||||||||||| |||  || |||| ||| ||||||||||||||||  || || | |||||||||||||||    
T  16954078 gaggagtgatatttgtacaactaatattaaacaactttggtgacaaccacttttctccttttgtgattggataaaaacaa 16953999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 37855155 - 37855085
Alignment:
Q  259 tgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaa 329  Q
    |||| ||||||||||| ||  || |||| ||||  |||||||| ||||||||| |||||||||||||||||    
T  37855155 tgatgtttgtacaacctattttaaacaacttttaagacaaccatttttcctcttttcttattggataaaaa 37855085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 298
Target Start/End: Complemental strand, 45606995 - 45606953
Alignment:
Q  256 gaatgatatttgtacaaccaatcctagacaatttttgtgacaa 298  Q
    |||||||||||| |||||||||| ||||||| |||||||||||    
T  45606995 gaatgatatttgcacaaccaatcttagacaacttttgtgacaa 45606953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 2849446 - 2849483
Alignment:
Q  291 tgtgacaaccacttttcctctcttcttattggataaaa 328  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  2849446 tgtgacaaccactttttctctcttcttattggacaaaa 2849483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 24652691 - 24652658
Alignment:
Q  15 aggatgggatgttcaccacctgcctcccaaccct 48  Q
    |||||||||||||||| |||||||||||||||||    
T  24652691 aggatgggatgttcacaacctgcctcccaaccct 24652658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 329
Target Start/End: Original strand, 24957097 - 24957158
Alignment:
Q  268 tacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaa 329  Q
    ||||| ||||| ||||||  |||| ||||||||||||||||||| ||  |||||||||||||    
T  24957097 tacaatcaatcatagacagcttttatgacaaccacttttcctctttttatattggataaaaa 24957158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 323
Target Start/End: Complemental strand, 41750290 - 41750217
Alignment:
Q  250 ttagaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattgga 323  Q
    ||||||||  |||||||| ||||||||    | |||||||| |||||||||  |||||||||||||||||||||    
T  41750290 ttagaggagcgatatttgaacaaccaaaatcaaacaattttagtgacaaccttttttcctctcttcttattgga 41750217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 332
Target Start/End: Original strand, 42663310 - 42663383
Alignment:
Q  259 tgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    ||||||||||||| | |||  ||||||| ||| ||||||||||||||||  ||||| | |||||| ||||||||    
T  42663310 tgatatttgtacatctaatattagacaactttggtgacaaccacttttctcctcttgtgattggacaaaaacaa 42663383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 332
Target Start/End: Original strand, 45256618 - 45256699
Alignment:
Q  251 tagaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    ||||||| ||||||||||||| | |||  ||||||| ||| ||||||||||||||||  || || | |||||| ||||||||    
T  45256618 tagaggattgatatttgtacatctaatattagacaactttggtgacaaccacttttctccttttgtgattggacaaaaacaa 45256699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 7212552 - 7212628
Alignment:
Q  253 gaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaa 329  Q
    ||||| ||||||||||||||| | |  ||||||||||| ||||||| |||||||  |||||| | || |||||||||    
T  7212552 gaggattgatatttgtacaactagttttagacaattttggtgacaatcacttttattctcttgtgataggataaaaa 7212628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 332
Target Start/End: Complemental strand, 23816436 - 23816384
Alignment:
Q  280 tagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    ||||||| |||| ||| |||||||||| |||| || |||||||||||||||||    
T  23816436 tagacaacttttttgaaaaccactttttctctttttttattggataaaaacaa 23816384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 252 - 332
Target Start/End: Original strand, 11113902 - 11113982
Alignment:
Q  252 agaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    |||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||| ||||||    
T  11113902 agaggaatgatatttgtacaaccaatcctaaacaacttttgtgataaccacttttcctctcttcttattggatataaacaa 11113982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 257 - 332
Target Start/End: Complemental strand, 10840896 - 10840821
Alignment:
Q  257 aatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    |||| |||||||||||||||| ||| |||| ||||||||||||||||||| |||| ||||||||||||||||||||    
T  10840896 aatggtatttgtacaaccaattctaaacaacttttgtgacaaccactttttctctattcttattggataaaaacaa 10840821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 261 - 332
Target Start/End: Complemental strand, 20029433 - 20029362
Alignment:
Q  261 atatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    |||| |||||||||||||||| |||| ||| |||||||| ||||||| ||||||||||||||||| ||||||    
T  20029433 atatctgtacaaccaatcctatacaactttggtgacaacaacttttcttctcttcttattggatataaacaa 20029362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 334
Target Start/End: Original strand, 31204697 - 31204780
Alignment:
Q  251 tagaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaaca 334  Q
    ||||||| |||||||||||||| ||||  |  ||||  |||||||||||||||||| |||||||||||| ||| |||| |||||    
T  31204697 tagaggagtgatatttgtacaatcaattttgtacaacctttgtgacaaccactttttctctcttcttatcggacaaaatcaaca 31204780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 329
Target Start/End: Complemental strand, 38743 - 38700
Alignment:
Q  284 caatttttgtgacaaccacttttcctctcttcttattggataaaaa 329  Q
    ||||||||| |||||||||||||||||||  |||||||||||||||    
T  38743 caatttttgagacaaccacttttcctctc--cttattggataaaaa 38700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 329
Target Start/End: Complemental strand, 25109226 - 25109149
Alignment:
Q  252 agaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaa 329  Q
    |||||| ||||||||||||||   ||  || |||| ||||| |||||||||||||||||  || ||||||||||||||    
T  25109226 agaggagtgatatttgtacaattcattttaaacaacttttgagacaaccacttttcctccttttttattggataaaaa 25109149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 328
Target Start/End: Original strand, 34019824 - 34019893
Alignment:
Q  259 tgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaa 328  Q
    ||||||||||||||| |||  |  ||||  ||||||| |||||||||| |||||||||||||||| ||||    
T  34019824 tgatatttgtacaactaattttgtacaacctttgtgataaccactttttctctcttcttattggacaaaa 34019893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 254 - 332
Target Start/End: Original strand, 14151652 - 14151730
Alignment:
Q  254 aggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    |||||||||||||||||||| |||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  14151652 aggaatgatatttgtacaactaatcttagacaacttttttgacaaccacttttcctctcttcttattggataaaaacaa 14151730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 40106780 - 40106704
Alignment:
Q  253 gaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaa 329  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||    
T  40106780 gaggaatgatatttgtacaatcaatcctagacaacttttgtgacaaccactttttctctcttcttattgaataaaaa 40106704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 253 - 334
Target Start/End: Complemental strand, 9366098 - 9366017
Alignment:
Q  253 gaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaaca 334  Q
    |||||||||||||||||||| ||||| || ||||||| | ||||||| ||||||| ||||||||||||||||||||||||||    
T  9366098 gaggaatgatatttgtacaatcaatcataaacaatttctatgacaactacttttcatctcttcttattggataaaaacaaca 9366017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 31629788 - 31629707
Alignment:
Q  251 tagaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    |||| |||||||||||||||||| |||| ||||||| || |||||||||||||||  |||||||||||||||||||||||||    
T  31629788 tagaagaatgatatttgtacaactaatcttagacaacttatgtgacaaccactttctctctcttcttattggataaaaacaa 31629707  T

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Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 248 - 328
Target Start/End: Original strand, 13453839 - 13453919
Alignment:
Q  248 ttttagaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaa 328  Q
    |||| ||||| |||||||||||||||||||  || |||||||||||||||||||||||| |||||||||||||||| ||||    
T  13453839 tttttgaggagtgatatttgtacaaccaattttatacaatttttgtgacaaccactttttctctcttcttattggacaaaa 13453919  T

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Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 252 - 332
Target Start/End: Original strand, 40602273 - 40602354
Alignment:
Q  252 agaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccac-ttttcctctcttcttattggataaaaacaa 332  Q
    ||||||||||||||| |||||||||||||||| ||  |||||||||||||| ||||||||| || |||||||||||||||||    
T  40602273 agaggaatgatatttatacaaccaatcctagataacatttgtgacaaccactttttcctctttttttattggataaaaacaa 40602354  T

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Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 30416547 - 30416466
Alignment:
Q  251 tagaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    ||||||||||||||||||| ||| |||| |||||||||||||||||||||| ||||  ||| || |||||||| ||||||||    
T  30416547 tagaggaatgatatttgtaaaacaaatcttagacaatttttgtgacaaccattttttttctttttttattggacaaaaacaa 30416466  T

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Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 256 - 332
Target Start/End: Complemental strand, 30415193 - 30415117
Alignment:
Q  256 gaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    |||||||||||||||||| |||  ||||||| |||||||||||||| |||| |||| || |||||||| ||||||||    
T  30415193 gaatgatatttgtacaacaaattttagacaacttttgtgacaaccattttttctcttttattattggacaaaaacaa 30415117  T

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Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 313
Target Start/End: Original strand, 39233641 - 39233702
Alignment:
Q  252 agaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctct 313  Q
    |||||||||||||||||||||  |||  ||||||||||||||||||| || |||||||||||    
T  39233641 agaggaatgatatttgtacaattaattttagacaatttttgtgacaatcatttttcctctct 39233702  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 329
Target Start/End: Original strand, 45376107 - 45376184
Alignment:
Q  252 agaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaa 329  Q
    |||||| ||||||||||||||| | |  || ||||  |||||||||||||||||| ||| ||||||||||||||||||    
T  45376107 agaggagtgatatttgtacaactagttttaaacaacctttgtgacaaccactttttctcacttcttattggataaaaa 45376184  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 329
Target Start/End: Complemental strand, 28544175 - 28544129
Alignment:
Q  283 acaatttttgtgacaaccacttttcctctcttcttattggataaaaa 329  Q
    |||| ||||||||||||||||||| ||||||| ||||||||||||||    
T  28544175 acaacttttgtgacaaccactttttctctctttttattggataaaaa 28544129  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 323
Target Start/End: Original strand, 43820636 - 43820700
Alignment:
Q  259 tgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattgga 323  Q
    |||||||||||||||||||  || | ||| |||||||||||||||||| || | |||||||||||    
T  43820636 tgatatttgtacaaccaattttatataatctttgtgacaaccactttttctttattcttattgga 43820700  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 332
Target Start/End: Original strand, 15123825 - 15123900
Alignment:
Q  257 aatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    ||||||||||||||||| |||  | || |||||| ||||||||||||||||  ||||| | |||||| ||||||||    
T  15123825 aatgatatttgtacaactaatatttgataattttggtgacaaccacttttctcctcttatgattggagaaaaacaa 15123900  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 328
Target Start/End: Complemental strand, 22966968 - 22966893
Alignment:
Q  253 gaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaa 328  Q
    ||||| |||||||||||||||||||  |  ||||  |||||||||| ||| ||| |||||||||||||||| ||||    
T  22966968 gaggagtgatatttgtacaaccaattttgtacaacctttgtgacaatcacattttctctcttcttattggacaaaa 22966893  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 332
Target Start/End: Original strand, 15610725 - 15610802
Alignment:
Q  255 ggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    |||||||||||||||||||||||  |  ||||  |||||||||| || |||| |||| || |||||||| ||||||||    
T  15610725 ggaatgatatttgtacaaccaattttgtacaacctttgtgacaaacattttttctctatttttattggacaaaaacaa 15610802  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 332
Target Start/End: Original strand, 32900221 - 32900294
Alignment:
Q  259 tgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    ||||||||||||||| |||  | |||||  ||||||| | ||| |||||||||||| ||||||||||| |||||    
T  32900221 tgatatttgtacaactaattttggacaacatttgtgatagccaattttcctctctttttattggataagaacaa 32900294  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 332
Target Start/End: Original strand, 34432392 - 34432465
Alignment:
Q  259 tgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    |||||||||||||||||||  |  |||| |||| ||||||||| |||| |||| || |||||||| ||||||||    
T  34432392 tgatatttgtacaaccaattttgtacaacttttttgacaaccattttttctctatttttattggacaaaaacaa 34432465  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 277
Target Start/End: Original strand, 37966358 - 37966391
Alignment:
Q  244 atagttttagaggaatgatatttgtacaaccaat 277  Q
    |||||||||||| |||||||||||||||||||||    
T  37966358 atagttttagagaaatgatatttgtacaaccaat 37966391  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 314
Target Start/End: Original strand, 37468158 - 37468214
Alignment:
Q  258 atgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctctt 314  Q
    ||||||||||||||||||||   | |||| |||||||||||||  ||||||||||||    
T  37468158 atgatatttgtacaaccaatttgaaacaacttttgtgacaaccttttttcctctctt 37468214  T

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Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 332
Target Start/End: Complemental strand, 5740525 - 5740449
Alignment:
Q  256 gaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    |||||||||||||||||||||||||| |||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  5740525 gaatgatatttgtacaaccaatcctaaacaacttttgtgacaatcacttttcttctcttcttattggataaaaacaa 5740449  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 252 - 332
Target Start/End: Complemental strand, 35474563 - 35474483
Alignment:
Q  252 agaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    |||||||||||||||||||||  |||  |  |||||||||||||||||||||||| |||| || |||||||| ||||||||    
T  35474563 agaggaatgatatttgtacaattaattttgtacaatttttgtgacaaccactttttctctatttttattggacaaaaacaa 35474483  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 329
Target Start/End: Complemental strand, 35570994 - 35570916
Alignment:
Q  251 tagaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaa 329  Q
    ||||||| |||||||||||||||  ||  || |||| ||||| ||||| || |||||||||||||||||||||||||||    
T  35570994 tagaggagtgatatttgtacaacttattttaaacaacttttgagacaatcatttttcctctcttcttattggataaaaa 35570916  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 248 - 332
Target Start/End: Original strand, 5899770 - 5899854
Alignment:
Q  248 ttttagaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    |||||||||||||||||||  ||||||||    | |||||||| ||||| |||  |||||||||||||||||||||||| |||||    
T  5899770 ttttagaggaatgatattttgacaaccaaaatcaaacaattttagtgactaccttttttcctctcttcttattggataataacaa 5899854  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 26754527 - 26754603
Alignment:
Q  253 gaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaa 329  Q
    ||||| |||||||||||||||  ||  || |||| ||||  ||||  ||||||||||||||||||||||||||||||    
T  26754527 gaggagtgatatttgtacaactcattttaaacaacttttaagacattcacttttcctctcttcttattggataaaaa 26754603  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 325
Target Start/End: Original strand, 4800387 - 4800461
Alignment:
Q  251 tagaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggata 325  Q
    ||||||| ||||||||||| ||| ||   ||||||| | | ||||||| || |||||||||||||||||||||||    
T  4800387 tagaggagtgatatttgtataactaaatttagacaactatagtgacaatcatttttcctctcttcttattggata 4800461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 35475990 - 35475920
Alignment:
Q  259 tgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaa 329  Q
    ||||||||||| ||| |||  || ||||||||| |||||||||||||| |||| |||||||| || |||||    
T  35475990 tgatatttgtataactaattttatacaatttttttgacaaccactttttctctattcttattagacaaaaa 35475920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 332
Target Start/End: Complemental strand, 844216 - 844136
Alignment:
Q  252 agaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    |||||| ||||||||||||||| |||  ||||||| ||| ||||||| ||||||||  || || | |||||| ||||||||    
T  844216 agaggagtgatatttgtacaactaatattagacaactttggtgacaatcacttttctccttttgtgattggacaaaaacaa 844136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 332
Target Start/End: Original strand, 30838253 - 30838333
Alignment:
Q  252 agaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    |||||| ||||||||||||| |||||  |  |||| | |||| ||||| |||||||  ||||| |||||||||||||||||    
T  30838253 agaggagtgatatttgtacagccaattttgtacaactcttgttacaactacttttctcctctttttattggataaaaacaa 30838333  T

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Target: scaffold1625 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold1625
Description:

Target: scaffold1625; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 252 - 327
Target Start/End: Original strand, 669 - 744
Alignment:
Q  252 agaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaa 327  Q
    ||||||||||||||||||||| |||| ||| |||| |||||||||||||||||||||| |||||||||||||||||    
T  669 agaggaatgatatttgtacaagcaattctaaacaacttttgtgacaaccacttttcctttcttcttattggataaa 744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 252 - 332
Target Start/End: Original strand, 6031 - 6111
Alignment:
Q  252 agaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    |||||| ||||||||||||| |||||  || ||||  ||||||||||||| ||||||||||||||||||||||||||||||    
T  6031 agaggagtgatatttgtacatccaattttaaacaacatttgtgacaaccatttttcctctcttcttattggataaaaacaa 6111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 252 - 332
Target Start/End: Original strand, 3546 - 3626
Alignment:
Q  252 agaggaatgatatttgtacaaccaatcctagacaatttttgtgacaaccacttttcctctcttcttattggataaaaacaa 332  Q
    |||||| |||||||||||||  ||||  || ||||  ||||||| | ||| ||||||||||||||||||||||||||||||    
T  3546 agaggagtgatatttgtacattcaattttaaacaacatttgtgatacccatttttcctctcttcttattggataaaaacaa 3626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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