View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5263_high_6 (Length: 296)
Name: NF5263_high_6
Description: NF5263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5263_high_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 35179095 - 35179371
Alignment:
| Q |
19 |
aggaccacaagtggtatatggtcttaccatttctttgtcgtgaactagctagagggcaacagaaaaagttggtggaattaaaagcctttgataggtatga |
118 |
Q |
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| T |
35179095 |
aggaccacaagtggtatatggtcttaccatttctttgtcgtgaactagctagagggcaacagaaaaagttggtggaattaaaagcctttgataggtatga |
35179194 |
T |
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| Q |
119 |
atagtacaagaagacctagtgaagactataagcaaacccttgtcctcactctccttaattactattgtggacttttctttagacaaagaatttttgcgaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35179195 |
atagtacaagaagacctagtgaagactataagcaaacccttgtcctcattctccttaattactattgtggacttttctttagacaaagaa-ttttgcgaa |
35179293 |
T |
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| Q |
219 |
aataatgatagatgagtaagtgggtcgaatctgattcctcctattgatgggaaaaatgttgccttatttagtgcctct |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35179294 |
aataatgatagatgagtaagtgggtcgaatctgattcctcctattgatgggaaaaatgttgccttatttagtgcctct |
35179371 |
T |
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