View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5263_high_7 (Length: 267)
Name: NF5263_high_7
Description: NF5263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5263_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 11 - 266
Target Start/End: Original strand, 39630657 - 39630912
Alignment:
| Q |
11 |
cacagatacaaggtaaacaagacacaaggcttctatctttctaattttatctggtaatgcattctttctgattcatcttttaatgcaggaggatgtgcag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39630657 |
cacagatacaaggtaaacaagacacaaggcttctatctttctaattttatctggtaatgcattctttctgattcatcttttaatgcaggaagatgtgcag |
39630756 |
T |
|
| Q |
111 |
ctcatggttgaaacaggccttgatgcctataggttttccatttcttggtcaagattgataccaagtatttaactgaactaaaaactttagtacatatcga |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39630757 |
ctcatggttgaaacaggccttgatgcctataggttttccatttcttggtcaagattgataccaagtatttaactgaacttaaaactttagtacatatcga |
39630856 |
T |
|
| Q |
211 |
tgaatgatgaaatttaacgttctttaattaatttttcagtaaagactgactccctt |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39630857 |
tgaatgatgaaatttaacgttctttaattaatttttcagtaaagactgactccctt |
39630912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 267
Target Start/End: Original strand, 39641443 - 39641698
Alignment:
| Q |
11 |
cacagatacaaggtaaacaagacacaaggcttctatctttctaattttatctggtaatgcattctttctgattcatcttttaatgcaggaggatgtgcag |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
39641443 |
cacaaatacaaggtaaacaagacacaaggcttctatctttctaattttgtctagtaatgcattctttatgattcatcttttaatgcaggaagatgtgcag |
39641542 |
T |
|
| Q |
111 |
ctcatggttgaaacaggccttgatgcctataggttttccatttcttggtcaagattgataccaagtatttaactgaactaaaaactttagtacatatcga |
210 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||| ||||| |
|
|
| T |
39641543 |
ctcatggttgaaacaggtcttgaagcctatagattttccatttcttggtcaagattgataccaagtattccactgaact-taaactttaatacagatcga |
39641641 |
T |
|
| Q |
211 |
tgaatgatgaaatttaacgttctttaattaatttttcagtaaagactgactcccttc |
267 |
Q |
| |
|
|||||| |||||||| |||||||||||||| ||||||||| |||||| ||||||||| |
|
|
| T |
39641642 |
tgaatggtgaaatttgacgttctttaattattttttcagtgaagactaactcccttc |
39641698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 266
Target Start/End: Original strand, 29121814 - 29122068
Alignment:
| Q |
11 |
cacagatacaaggtaaacaagacacaaggcttctatctttctaattttatctggtaatgcattctttctgattcatcttttaatgcaggaggatgtgcag |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
29121814 |
cacaaatacaaggtaaacaagacacaaggcttctatctttctaattttgtccggtaatgcattctttctgattcatcttttaatgcaggaagatgtgcaa |
29121913 |
T |
|
| Q |
111 |
ctcatggttgaaacaggccttgatgcctataggttttccatttcttggtcaagattgataccaagtatttaactgaactaaaaactttagtacatatcga |
210 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
29121914 |
ctcatggttgaaacaggcctcgatgcctataggttttccatttcttggtcaagattgataccaagtattctactgaact-taaactttagtacatatcga |
29122012 |
T |
|
| Q |
211 |
tgaatgatgaaatttaacgttctttaattaatttttcagtaaagactgactccctt |
266 |
Q |
| |
|
|||||| |||||||||| |||||||||| | |||||||||||||||| |||||||| |
|
|
| T |
29122013 |
tgaatggtgaaatttaaagttctttaatcattttttcagtaaagacttactccctt |
29122068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University