View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5263_low_1 (Length: 625)

Name: NF5263_low_1
Description: NF5263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5263_low_1
NF5263_low_1
[»] chr8 (7 HSPs)
chr8 (17-616)||(455962-456547)
chr8 (291-616)||(1636010-1636322)
chr8 (299-616)||(26616609-26616911)
chr8 (404-498)||(44145821-44145915)
chr8 (520-609)||(38560709-38560798)
chr8 (414-497)||(38560616-38560699)
chr8 (520-609)||(44145724-44145812)
[»] chr3 (11 HSPs)
chr3 (299-616)||(54346747-54347051)
chr3 (299-616)||(27156050-27156354)
chr3 (299-484)||(43813078-43813262)
chr3 (520-609)||(46428575-46428664)
chr3 (535-609)||(43912358-43912432)
chr3 (520-609)||(42794505-42794594)
chr3 (520-609)||(54812339-54812428)
chr3 (414-498)||(42794603-42794687)
chr3 (525-587)||(43812988-43813050)
chr3 (404-498)||(54812236-54812330)
chr3 (414-498)||(46428673-46428757)
[»] chr4 (7 HSPs)
chr4 (299-616)||(34389688-34389992)
chr4 (299-616)||(36894299-36894603)
chr4 (520-609)||(47597681-47597770)
chr4 (404-495)||(4228291-4228382)
chr4 (520-609)||(43270881-43270970)
chr4 (554-610)||(1369357-1369413)
chr4 (554-610)||(28945496-28945552)
[»] chr1 (9 HSPs)
chr1 (299-616)||(23949710-23950014)
chr1 (299-611)||(23084793-23085092)
chr1 (299-616)||(5308654-5308958)
chr1 (287-612)||(34553743-34554055)
chr1 (299-579)||(42677240-42677507)
chr1 (299-616)||(50952448-50952754)
chr1 (520-609)||(22065292-22065381)
chr1 (554-610)||(6293939-6293995)
chr1 (414-494)||(22065199-22065279)
[»] chr7 (6 HSPs)
chr7 (299-616)||(48618946-48619250)
chr7 (299-616)||(8019628-8019931)
chr7 (287-607)||(29213599-29213907)
chr7 (404-609)||(24473467-24473659)
chr7 (404-498)||(24468617-24468711)
chr7 (554-610)||(46045830-46045886)
[»] chr2 (10 HSPs)
chr2 (299-616)||(13186900-13187203)
chr2 (286-517)||(6599017-6599248)
chr2 (365-616)||(7305029-7305267)
chr2 (299-517)||(40426050-40426268)
chr2 (288-579)||(37307166-37307444)
chr2 (291-616)||(40190294-40190606)
chr2 (520-609)||(17290048-17290137)
chr2 (535-612)||(26381377-26381454)
chr2 (414-498)||(17290146-17290230)
chr2 (554-610)||(42865840-42865896)
[»] chr5 (8 HSPs)
chr5 (299-616)||(18259022-18259326)
chr5 (299-616)||(22540222-22540526)
chr5 (299-616)||(34080624-34080925)
chr5 (404-609)||(4560304-4560496)
chr5 (520-609)||(18883400-18883489)
chr5 (404-498)||(18934170-18934264)
chr5 (520-609)||(18934072-18934161)
chr5 (554-610)||(14024858-14024914)
[»] chr6 (1 HSPs)
chr6 (520-609)||(1223053-1223142)


Alignment Details
Target: chr8 (Bit Score: 447; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 17 - 616
Target Start/End: Original strand, 455962 - 456547
Alignment:
Q  17 caccccaccgatcacacattataccttctttcttaccctttggaataaaaataatgacaattaagtatataatcgagtgtttttcttttatacttgggct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  455962 caccccaccgatcacacattataccttctttcttaccctttggaataaaaataatgacaattaagtatataatcgagtgtttttcttttatacttgggct 456061  T
Q  117 aaatgtcaaaactgtataagaaaaaacagtcataacatgaagaaaaataaatgtcatattttattgagagaaaatg-aattaatgtattagataaaaaca 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||    
T  456062 aaatgtcaaaactgtataagaaaaaacagtcataacatgaagaaaaataaatgtc--attttattgagagaaaatgaaattaatgtattagataaaaaca 456159  T
Q  216 aatgctacgaaatactttaaaatatttccannnnnnnnnnggtataagagaagacaaagcccnnnnnnnccaaactaaaaagataatcaaacattcatag 315  Q
    ||||||||||||||||||||||||||||||          |||| |||||||| ||||||||       |||||||||||||||||||||||||||||||    
T  456160 aatgctacgaaatactttaaaatatttccaatttttttttggtacaagagaaggcaaagcccaaaaaaaccaaactaaaaagataatcaaacattcatag 456259  T
Q  316 gcatgcaagccccggataaataatcaaaaaggattctttggacctcattaggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaa 415  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  456260 gcatgcaagtcccggataaataatcaaaaaggattctttggaccttattaggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaa 456359  T
Q  416 attagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttccgaatccggtgaaataaa 515  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||                
T  456360 attagcgagccaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcatcttcagtagcttccggatc------------ 456447  T
Q  516 acggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatgagaataa 615  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  456448 -cggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatatcaatcaaactctttgaatcactttccactataagatgagagtaa 456546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 291 - 616
Target Start/End: Complemental strand, 1636322 - 1636010
Alignment:
Q  291 taaaaagataatcaaacattcataggcatgcaagccccggataaataatcaaaaaggattctttggacctcattaggaggaaactccagcactaaaaaat 390  Q
    ||||||| ||||| ||||||  |||||||||||| ||| ||||||| |||||||| |||||||| || ||||  ||||||| |||||||||| | |||||    
T  1636322 taaaaagttaatcgaacatttctaggcatgcaagtcccagataaatcatcaaaaatgattcttttgatctcaaaaggaggagactccagcacaagaaaat 1636223  T
Q  391 caaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcag 490  Q
     ||| ||||  ||||||||| ||||||||||||| |||| |||||||||||||||||| ||  |||||||| |||||||||||||||||||||| |||||    
T  1636222 taaaatgatctgtagaaatgattaaattagcgagccaatcagcactcctatttccttcacgctaagtatgggtgagttgaacattccaactcatcttcag 1636123  T
Q  491 cagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatc 590  Q
    ||||||||| ||             ||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  1636122 cagcttccggat-------------acggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatc 1636036  T
Q  591 actttccactataagatgagaataat 616  Q
    ||||||||||||||||||||| ||||    
T  1636035 actttccactataagatgagagtaat 1636010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 299 - 616
Target Start/End: Original strand, 26616609 - 26616911
Alignment:
Q  299 taatcaaacattcataggcatgcaagccccggataaataatcaaaaaggattctttggacctcattaggaggaaactccagcactaaaaaatcaaagtga 398  Q
    ||||| ||||||  |||||||||||||  ||||||||| |||||||| |||||||| ||| |||  ||||||| |||||| ||||| ||||| ||| |||    
T  26616609 taatcgaacatttctaggcatgcaagcttcggataaatcatcaaaaatgattcttttgacatcacaaggaggagactccaacactagaaaattaaaatga 26616708  T
Q  399 tacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 498  Q
    |  ||||||||| ||||||||| ||| |||| || |||| |||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||    
T  26616709 tctgtagaaatgcttaaattagtgagccaatcagtactcatatttccttcacgccaagtatggttgagttgaacattccaactcatcttcagcagcttcc 26616808  T
Q  499 gaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttcca 598  Q
      ||||||| || |               ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  26616809 agatccggtaaact---------------aacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttcca 26616893  T
Q  599 ctataagatgagaataat 616  Q
    ||||||||||||| ||||    
T  26616894 ctataagatgagagtaat 26616911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 404 - 498
Target Start/End: Complemental strand, 44145915 - 44145821
Alignment:
Q  404 agaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 498  Q
    ||||||| | |||||||| ||||||| |||||| ||||||||||| || ||||||||||||| ||| |||| ||||  |||| ||||||||||||    
T  44145915 agaaatgctaaaattagcaagtcaatcagcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcc 44145821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 520 - 609
Target Start/End: Original strand, 38560709 - 38560798
Alignment:
Q  520 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 609  Q
    |||| ||||| ||| ||||||||||| || |||||  |||||||||||| ||| |||||  |||| ||  ||||||||||||||||||||    
T  38560709 tgaactaaaatagggatattcccattaaatttgaacctatcagaaatcacgtcgatcaatatcttcgagccactttccactataagatga 38560798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 38560616 - 38560699
Alignment:
Q  414 aaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttc 497  Q
    |||||||| || ||||  ||||| |||||||||||| | ||||||||||||| ||| |||| ||||  |||| |||||||||||    
T  38560616 aaattagcaagccaatcggcacttctatttccttcgtgccaagtatggttgatttgcacatgccaatccattctcagcagcttc 38560699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 609
Target Start/End: Complemental strand, 44145812 - 44145724
Alignment:
Q  520 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 609  Q
    |||| ||||| ||| | ||||||||| |||||||| |  |||||||||||||| |||||  |||| || ||||||||||| |||||||||    
T  44145812 tgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccac-ataagatga 44145724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 162; Significance: 4e-86; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 299 - 616
Target Start/End: Complemental strand, 54347051 - 54346747
Alignment:
Q  299 taatcaaacattcataggcatgcaagccccggataaataatcaaaaaggattctttggacctcattaggaggaaactccagcactaaaaaatcaaagtga 398  Q
    ||||| ||||||| |||||||| ||||||||||||||| ||||||||||||||||| |||||||  ||||||| |||||||||| | ||||| ||| |||    
T  54347051 taatcgaacattcctaggcatgtaagccccggataaatcatcaaaaaggattcttttgacctcacaaggaggagactccagcacaagaaaattaaaatga 54346952  T
Q  399 tacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 498  Q
    |  ||||||||| ||||||||||||| |||| |||||||||||||||||| || ||||||||| |||||||||||||||||||||| |||||||||||||    
T  54346951 tctgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatcttcagcagcttcc 54346852  T
Q  499 gaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttcca 598  Q
    | ||             ||||| || ||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  54346851 ggat-------------acggtaaactaaaacaggaatatttccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttcca 54346765  T
Q  599 ctataagatgagaataat 616  Q
    ||||||||||||| ||||    
T  54346764 ctataagatgagagtaat 54346747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 299 - 616
Target Start/End: Original strand, 27156050 - 27156354
Alignment:
Q  299 taatcaaacattcataggcatgcaagccccggataaataatcaaaaaggattctttggacctcattaggaggaaactccagcactaaaaaatcaaagtga 398  Q
    ||||| ||| ||| ||||||||||||| |||||||||| || |||||||||||||| |||||||  ||||||| |||||| ||||| ||||| ||| |||    
T  27156050 taatcgaacgttcctaggcatgcaagctccggataaatcattaaaaaggattcttttgacctcacaaggaggagactccaacactagaaaattaaaatga 27156149  T
Q  399 tacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 498  Q
    |  ||||||||| | ||||||||||| |||| |||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||    
T  27156150 tctgtagaaatgctgaaattagcgagccaatcagcactcctatttccttcacgccaagtatggttgagttgaacattccaactcatcttcagcagcttcc 27156249  T
Q  499 gaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttcca 598  Q
    | |||||||      ||||       ||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  27156250 ggatccggt------aaac-------taaaacaggaatattcccattaaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttcca 27156336  T
Q  599 ctataagatgagaataat 616  Q
    ||||||||||||| ||||    
T  27156337 ctataagatgagagtaat 27156354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 299 - 484
Target Start/End: Complemental strand, 43813262 - 43813078
Alignment:
Q  299 taatcaaacattcataggcatgcaagccccggataaataatcaaaaaggattctttggacctcattaggaggaaactccagcactaaaaaatcaaagtga 398  Q
    ||||| ||||||| ||||||| ||| |  ||||||||| |||||||| || |  |||||||||| |||||||| ||| || ||  || |||| |||  ||    
T  43813262 taatcgaacattcctaggcatacaaactacggataaatcatcaaaaatgagttattggacctcactaggaggagacttcaacaacaacaaattaaac-ga 43813164  T
Q  399 tacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcat 484  Q
    |   |||||||| |||| ||||||||||||| |||||||| ||||||||| || ||| ||||||||||||||||||| ||||||||    
T  43813163 tctatagaaatgcttaagttagcgagtcaatcagcactccaatttccttcacgccaattatggttgagttgaacatttcaactcat 43813078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 520 - 609
Target Start/End: Complemental strand, 46428664 - 46428575
Alignment:
Q  520 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 609  Q
    |||| ||||| ||| ||||||||||| |||||||| || |||||||||||||| |||||  |||| || ||||||||||| |||||||||    
T  46428664 tgaactaaaataggcatattcccattaaacttgaacttgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaataagatga 46428575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 535 - 609
Target Start/End: Original strand, 43912358 - 43912432
Alignment:
Q  535 atattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 609  Q
    ||||||||||| |||||||| || |||||||||||||  |||||  ||||||| |||||||| ||||||||||||    
T  43912358 atattcccattaaacttgaacttctcagaaatcatgttgatcaatatctttgagtcactttcaactataagatga 43912432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 520 - 609
Target Start/End: Complemental strand, 42794594 - 42794505
Alignment:
Q  520 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 609  Q
    |||| ||||| ||| ||||||||||| |||||||| || | |||||||||||| |||||  |||| || ||||||||||| |||||||||    
T  42794594 tgaactaaaataggcatattcccattaaacttgaacttgttagaaatcatgtcgatcaatatcttcgagtcactttccacaataagatga 42794505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 520 - 609
Target Start/End: Original strand, 54812339 - 54812428
Alignment:
Q  520 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 609  Q
    |||| ||||| ||| | ||||||||| |||||||| |  |||||||||||||| |||||  |||| || ||||||||||| |||||||||    
T  54812339 tgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaataagatga 54812428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 414 - 498
Target Start/End: Complemental strand, 42794687 - 42794603
Alignment:
Q  414 aaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 498  Q
    |||||||| || ||||  ||||| ||||||||||| || ||||||||||||| ||| |||| ||||  |||| ||||||||||||    
T  42794687 aaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcc 42794603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 525 - 587
Target Start/End: Complemental strand, 43813050 - 43812988
Alignment:
Q  525 taaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttga 587  Q
    ||||||| ||||||| |||||  | |||||||||||||||||||| || |||||| |||||||    
T  43813050 taaaacatgaatattgccattacatttgaaattatcagaaatcatatcgatcaaaatctttga 43812988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 404 - 498
Target Start/End: Original strand, 54812236 - 54812330
Alignment:
Q  404 agaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 498  Q
    ||||||| | |||||||| || ||||  ||||| ||||||||||| || ||||||||||||| ||| |||| | ||  |||| ||||||||||||    
T  54812236 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgctaatccattctcagcagcttcc 54812330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 414 - 498
Target Start/End: Complemental strand, 46428757 - 46428673
Alignment:
Q  414 aaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 498  Q
    |||||||| || ||||  ||||| |||||||||||  | ||||||||||||| ||| |||| ||||  |||| ||||||||||||    
T  46428757 aaattagcaagccaatcggcacttctatttccttcatgccaagtatggttgatttgcacatgccaatccattctcagcagcttcc 46428673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 161; Significance: 1e-85; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 299 - 616
Target Start/End: Original strand, 34389688 - 34389992
Alignment:
Q  299 taatcaaacattcataggcatgcaagccccggataaataatcaaaaaggattctttggacctcattaggaggaaactccagcactaaaaaatcaaagtga 398  Q
    ||||| ||||||| |||||||| ||||||||||||||| ||||||||||||||||| |||||||  ||||||| |||||| ||||||||||| ||| |||    
T  34389688 taatcgaacattcctaggcatgtaagccccggataaatcatcaaaaaggattcttttgacctcacaaggaggagactccaacactaaaaaattaaaatga 34389787  T
Q  399 tacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 498  Q
    || ||| ||||| ||||||||||||| |||| |||||||||||||||||| ||  |||||||||||||||||||||||||| |||| ||||||||||| |    
T  34389788 tatgtaaaaatgcttaaattagcgagccaatcagcactcctatttccttcacgctaagtatggttgagttgaacattccaaatcatcttcagcagctttc 34389887  T
Q  499 gaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttcca 598  Q
    | |||||||      ||||       ||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  34389888 ggatccggt------aaac-------taaaacaagaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttcca 34389974  T
Q  599 ctataagatgagaataat 616  Q
    ||||||||||||| ||||    
T  34389975 ctataagatgagagtaat 34389992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 299 - 616
Target Start/End: Original strand, 36894299 - 36894603
Alignment:
Q  299 taatcaaacattcataggcatgcaagccccggataaataatcaaaaaggattctttggacctcattaggaggaaactccagcactaaaaaatcaaagtga 398  Q
    ||||| ||||||| ||||||||||||| |||||||||| ||||||||||||||||| |||||||  ||||||| |||||| ||||| ||||| ||| |||    
T  36894299 taatcgaacattcctaggcatgcaagctccggataaatcatcaaaaaggattcttttgacctcacaaggaggagactccaacactagaaaattaaaatga 36894398  T
Q  399 tacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 498  Q
    |  ||| ||||| ||||||||||||| |||| | |||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||| |||||    
T  36894399 tctgtataaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatggttgagttgaacattccaactcatcttcagcaacttcc 36894498  T
Q  499 gaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttcca 598  Q
    | |||||||      ||||       |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||    
T  36894499 ggatccggt------aaac-------taaaacaggaatattcacattgaacttgaaattattagaaatcatgtcgatcaaaatctttgaatcactttcca 36894585  T
Q  599 ctataagatgagaataat 616  Q
    ||||||||||||| ||||    
T  36894586 ctataagatgagagtaat 36894603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 520 - 609
Target Start/End: Original strand, 47597681 - 47597770
Alignment:
Q  520 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 609  Q
    |||| ||||| ||| ||||||||||| |||||||| || |||||||||||||| |||||  |||| || ||||||||||| |||||||||    
T  47597681 tgaactaaaataggcatattcccattaaacttgaacttgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaataagatga 47597770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 495
Target Start/End: Complemental strand, 4228382 - 4228291
Alignment:
Q  404 agaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagct 495  Q
    ||||||| | |||||||| || ||||  ||||| ||||||||||| || ||||||||||||| ||| |||| ||||  |||| |||||||||    
T  4228382 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagct 4228291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 609
Target Start/End: Original strand, 43270881 - 43270970
Alignment:
Q  520 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 609  Q
    |||| ||||| ||| ||||| ||||| | ||||||||| ||| |||||||||| |||||  |||| || |||||||  ||||||||||||    
T  43270881 tgaactaaaatagggatatttccattaagcttgaaattgtcaaaaatcatgtcgatcaatatcttagagtcacttttaactataagatga 43270970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 554 - 610
Target Start/End: Complemental strand, 1369413 - 1369357
Alignment:
Q  554 aattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatgag 610  Q
    |||| |||| ||||||||| | |||| ||||||| ||||| ||||||||||||||||    
T  1369413 aattttcagtaatcatgtcgaccaaaatctttgagtcactctccactataagatgag 1369357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 554 - 610
Target Start/End: Original strand, 28945496 - 28945552
Alignment:
Q  554 aattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatgag 610  Q
    |||| |||| ||||||||| | |||| ||||||| ||||| ||||||||||||||||    
T  28945496 aattttcagtaatcatgtcgaccaaaatctttgagtcactctccactataagatgag 28945552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 158; Significance: 9e-84; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 299 - 616
Target Start/End: Complemental strand, 23950014 - 23949710
Alignment:
Q  299 taatcaaacattcataggcatgcaagccccggataaataatcaaaaaggattctttggacctcattaggaggaaactccagcactaaaaaatcaaagtga 398  Q
    ||||| ||||||| ||||||||||| |||||||||||| |||||||| |||||||| |||||||  ||||||| |||||| ||| | ||||| ||| |||    
T  23950014 taatcgaacattcctaggcatgcaaaccccggataaatcatcaaaaatgattcttttgacctcacaaggaggagactccaacacaataaaattaaaatga 23949915  T
Q  399 tacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 498  Q
    |  ||||||||| ||||||||||||| |||| |||||||||||||||||| || |||||||||||||||||||||||| ||||||| |||||||||||||    
T  23949914 tctgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatggttgagttgaacattctaactcatcttcagcagcttcc 23949815  T
Q  499 gaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttcca 598  Q
    | ||             ||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  23949814 ggat-------------acggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttcca 23949728  T
Q  599 ctataagatgagaataat 616  Q
    ||||||||||||| ||||    
T  23949727 ctataagatgagattaat 23949710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 299 - 611
Target Start/End: Original strand, 23084793 - 23085092
Alignment:
Q  299 taatcaaacattcataggcatgcaagccccggataaataatcaaaaaggattctttggacctcattaggaggaaactccagcactaaaaaatcaaagtga 398  Q
    ||||| ||||||| |||| |||||||| |||||||||| |||||||| |||| ||| |||||||  ||||||| |||||| ||||| ||||| ||| |||    
T  23084793 taatcgaacattcctaggtatgcaagctccggataaatcatcaaaaatgattattttgacctcacaaggaggagactccaacactagaaaattaaaatga 23084892  T
Q  399 tacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 498  Q
    |||||||||||| ||||||||||||| |||| |||||||||||||||||| || ||| |||||||||||||||||||||||||||| |||||||||||||    
T  23084893 tacgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaaatatggttgagttgaacattccaactcatcttcagcagcttcc 23084992  T
Q  499 gaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttcca 598  Q
    | |||||||      ||||       ||||||| ||||||||||||||||||||||||||||| |||||||||| |||||| ||||| ||||||||||||    
T  23084993 ggatccggt------aaac-------taaaacatgaatattcccattgaacttgaaattatcaaaaatcatgtcgatcaaaatctttaaatcactttcca 23085079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 299 - 616
Target Start/End: Complemental strand, 5308958 - 5308654
Alignment:
Q  299 taatcaaacattcataggcatgcaagccccggataaataatcaaaaaggattctttggacctcattaggaggaaactccagcactaaaaaatcaaagtga 398  Q
    ||||| ||||||| |||||||||||| || |||||||| |||||||| |||||||| |||||||  ||||||| |||||| ||| | ||||| ||| |||    
T  5308958 taatcgaacattcctaggcatgcaagtcctggataaatcatcaaaaatgattcttttgacctcacaaggaggagactccaacacaagaaaattaaaatga 5308859  T
Q  399 tacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 498  Q
    || ||||||||| ||||||||||||| |||| |||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||| ||||    
T  5308858 tatgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatggttgagttgaacattccaactcatcttcagcagattcc 5308759  T
Q  499 gaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttcca 598  Q
    | ||             ||||| || ||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||    
T  5308758 ggat-------------acggtaaactaaaacaggaatatttccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgattcactttcca 5308672  T
Q  599 ctataagatgagaataat 616  Q
    ||||||||||||| ||||    
T  5308671 ctataagatgagagtaat 5308654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 287 - 612
Target Start/End: Original strand, 34553743 - 34554055
Alignment:
Q  287 aaactaaaaagataatcaaacattcataggcatgcaagccccggataaataatcaaaaaggattctttggacctcattaggaggaaactccagcactaaa 386  Q
    ||||||| ||| ||||| ||||||||||||||||||||| | |||||||| ||||||||||||| ||||||||||| |||||||| |||||| ||| | |    
T  34553743 aaactaacaagctaatcgaacattcataggcatgcaagctctggataaatcatcaaaaaggattttttggacctcactaggaggagactccaacacaaga 34553842  T
Q  387 aaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattt 486  Q
    |||| ||||||||| ||| |||||||||||||||||||||||| |||||| ||||||||||| |  |||||||||||||||||||||||| ||||||| |    
T  34553843 aaattaaagtgatatgtataaatgtttaaattagcgagtcaatcagcacttctatttccttcacaccaagtatggttgagttgaacattctaactcatct 34553942  T
Q  487 tcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttg 586  Q
    |||||| |||| | |||             | ||||| ||||| || |||||||||||  || |  |||||||||||||||||||| || ||| ||||||    
T  34553943 tcagcatcttctggatc-------------cagtgaactaaaatagaaatattcccatcaaattcaaaattatcagaaatcatgtcgataaaaatctttg 34554029  T
Q  587 aatcactttccactataagatgagaa 612  Q
    ||||||||||||||||||||||||||    
T  34554030 aatcactttccactataagatgagaa 34554055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 299 - 579
Target Start/End: Complemental strand, 42677507 - 42677240
Alignment:
Q  299 taatcaaacattcataggcatgcaagccccggataaataatcaaaaaggattctttggacctcattaggaggaaactccagcactaaaaaatcaaagtga 398  Q
    ||||| || |||| |||||||||||||||| ||||||| ||||||||||||||||| |||||||  ||||||| |||||| ||||| ||||| |||  ||    
T  42677507 taatcgaatattcctaggcatgcaagccccagataaatcatcaaaaaggattcttttgacctcacaaggaggagactccaacactagaaaattaaaaaga 42677408  T
Q  399 tacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 498  Q
    |  ||||||||| ||||||||||||| |||| |||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||    
T  42677407 tctgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatggttgagttgaacattccaactcatcttcagcagcttcc 42677308  T
Q  499 gaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaa 579  Q
    | ||             ||||| || ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  42677307 ggat-------------acggtaaactaaaacaggaatatttccattgaacttgaaattatcagaaatcatgtcgatcaaa 42677240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 299 - 616
Target Start/End: Original strand, 50952448 - 50952754
Alignment:
Q  299 taatcaaacattcataggcatgcaagccccggataaataatcaaaaaggattctttgg--acctcattaggaggaaactccagcactaaaaaatcaaagt 396  Q
    ||||| ||||||| |||| ||||||||||| ||||||| || ||||| ||| ||||    |  |||  ||||||| |||||| ||||| ||||| |||      
T  50952448 taatcgaacattcctaggtatgcaagccccagataaatcataaaaaatgatacttttttaatttcacaaggaggatactccaacactagaaaattaaaaa 50952547  T
Q  397 gatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagctt 496  Q
    |||  ||||||||| ||| ||||||||| |||| ||||||||||||| |||| || |||||||||||||||||||||||||||||||| |||||||||||    
T  50952548 gatctgtagaaatgcttatattagcgagccaatcagcactcctattttcttcacgccaagtatggttgagttgaacattccaactcatcttcagcagctt 50952647  T
Q  497 ccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttc 596  Q
    ||| |||||||      ||||       ||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  50952648 ccggatccggt------aaac-------taaaacatgaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttc 50952734  T
Q  597 cactataagatgagaataat 616  Q
    ||||||||||| ||| ||||    
T  50952735 cactataagattagagtaat 50952754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 520 - 609
Target Start/End: Original strand, 22065292 - 22065381
Alignment:
Q  520 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 609  Q
    |||| ||||| ||| | ||||||||| |||||||| || |||||||||||||| |||||  |||| || ||||||||||| |||||||||    
T  22065292 tgaactaaaataggcacattcccattaaacttgaacttgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaataagatga 22065381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 554 - 610
Target Start/End: Complemental strand, 6293995 - 6293939
Alignment:
Q  554 aattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatgag 610  Q
    |||| |||| ||||||||| | |||| ||||||| ||||| ||||||||||||||||    
T  6293995 aattttcagtaatcatgtcgaccaaaatctttgagtcactctccactataagatgag 6293939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 414 - 494
Target Start/End: Original strand, 22065199 - 22065279
Alignment:
Q  414 aaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagc 494  Q
    |||||||| || ||||  ||||| ||||||||||| || ||||||||||||| ||| |||| ||||  |||| ||||||||    
T  22065199 aaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagc 22065279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 154; Significance: 2e-81; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 299 - 616
Target Start/End: Complemental strand, 48619250 - 48618946
Alignment:
Q  299 taatcaaacattcataggcatgcaagccccggataaataatcaaaaaggattctttggacctcattaggaggaaactccagcactaaaaaatcaaagtga 398  Q
    ||||| ||||||| || ||||||||||||||||||||| ||||||||||||||||| || ||||  ||||||| |||||| ||||| ||||| ||| |||    
T  48619250 taatcgaacattcctaagcatgcaagccccggataaatcatcaaaaaggattcttttgatctcagaaggaggagactccaacactagaaaattaaaatga 48619151  T
Q  399 tacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 498  Q
    |  ||||||||| ||||||||||||| |||| ||||||| |||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||    
T  48619150 tttgtagaaatgcttaaattagcgagccaatcagcactcttatttccttcacgccaagtatggttgagttgaacattccaactcatcttcagcagcttcc 48619051  T
Q  499 gaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttcca 598  Q
    | ||             || || || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  48619050 ggat-------------acagtaaactaaaacaggaatattcccattaaacttgaaattatcagaaatcatgtcaatcaaaatctttgaatcactttcca 48618964  T
Q  599 ctataagatgagaataat 616  Q
    ||||||||| ||| ||||    
T  48618963 ctataagataagagtaat 48618946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 299 - 616
Target Start/End: Original strand, 8019628 - 8019931
Alignment:
Q  299 taatcaaacattcataggcatgcaagccccggataaataatcaaaaaggattctttggacctcattaggaggaaactccagcactaaaaaatcaaagtga 398  Q
    ||||| ||||||| |||||||||||| ||||||||||| ||||||||||||||||| |||||||  ||||||| |||||||||| | ||||| ||| |||    
T  8019628 taatcgaacattcttaggcatgcaagtcccggataaatcatcaaaaaggattcttttgacctcacaaggaggagactccagcacaagaaaattaaa-tga 8019726  T
Q  399 tacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 498  Q
    |  |||||| |  ||||||||||||| |||| |||||||||||||||||| || ||||||||| |||||||||||||||||||||| |||||||| ||||    
T  8019727 tctgtagaattacttaaattagcgagccaatcagcactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatcttcagcagattcc 8019826  T
Q  499 gaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttcca 598  Q
    | ||             ||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  8019827 ggat-------------acggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttcca 8019913  T
Q  599 ctataagatgagaataat 616  Q
    ||||||||||||| ||||    
T  8019914 ctataagatgagagtaat 8019931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 287 - 607
Target Start/End: Original strand, 29213599 - 29213907
Alignment:
Q  287 aaactaaaaagataatcaaacattcataggcatgcaagccccggataaataatcaaaaaggattctttggacctcattaggaggaaactccagcactaaa 386  Q
    ||||||| ||| ||||| ||||||| ||||||||||||||| |||||||| |||||||| |||||||||||||||| |||||||| |||||| ||| | |    
T  29213599 aaactaacaagctaatcgaacattcctaggcatgcaagcccaggataaatcatcaaaaaagattctttggacctcactaggaggagactccaacacaaga 29213698  T
Q  387 aaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcc-tatttccttcgcgtcaagtatggttgagttgaacattccaactcatt 485  Q
    |||| ||||||||  ||||||||| |||||||||||||||||| | |||||| | |||| ||| || ||||||||||||||||||||||||||||||||     
T  29213699 aaattaaagtgatctgtagaaatgcttaaattagcgagtcaatcaacactccttttttctttcacgccaagtatggttgagttgaacattccaactcatc 29213798  T
Q  486 ttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactcttt 585  Q
    ||||  |||||| | |||             ||||||| |||||||| |||||| |||||||||||||||||||||||||||||||| |||||| |||||    
T  29213799 ttcaatagcttctggatc-------------cggtgaagtaaaacagaaatatttccattgaacttgaaattatcagaaatcatgtcgatcaaaatcttt 29213885  T
Q  586 gaatcactttccactataagat 607  Q
    |||||||||||||||| |||||    
T  29213886 gaatcactttccactacaagat 29213907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 404 - 609
Target Start/End: Complemental strand, 24473659 - 24473467
Alignment:
Q  404 agaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttccgaatc 503  Q
    ||||||| | |||||||| || ||||  ||||| ||||||||||| || ||||||||||||| ||| |||| ||||  |||| ||||||||||||         
T  24473659 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcc----- 24473565  T
Q  504 cggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactata 603  Q
            | | ||| |||| ||||| ||| ||||||||||| |||||||| || |||||||||||||| |||||  |||| || ||||||||||| |||    
T  24473564 --------tgatacgatgaactaaaataggcatattcccattaaacttgaacttgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaata 24473473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 498
Target Start/End: Complemental strand, 24468711 - 24468617
Alignment:
Q  404 agaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 498  Q
    ||||||| | |||||||| || ||||  ||||| ||||||||||| || ||||||||||||| ||| |||| ||||  |||| ||||||||||||    
T  24468711 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcc 24468617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 554 - 610
Target Start/End: Complemental strand, 46045886 - 46045830
Alignment:
Q  554 aattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatgag 610  Q
    |||| |||| ||||||||| | |||| ||||||| ||||| ||||||||||||||||    
T  46045886 aattttcagtaatcatgtcgaccaaaatctttgagtcactctccactataagatgag 46045830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 154; Significance: 2e-81; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 299 - 616
Target Start/End: Complemental strand, 13187203 - 13186900
Alignment:
Q  299 taatcaaacattcataggcatgcaagccccggataaataatcaaaaaggattctttggacctcattaggaggaaactccagcactaaaaaatcaaagtga 398  Q
    ||||| ||||||| ||||||||||||||||| |||||| |||||||||||||||||| ||||||  ||||||| |||||| ||| | ||||| ||| |||    
T  13187203 taatcgaacattcctaggcatgcaagccccgaataaatcatcaaaaaggattctttg-acctcacaaggaggagactccaacacaataaaattaaaatga 13187105  T
Q  399 tacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 498  Q
    || ||||||||| ||||||||||||| |||| |||||||||||||||||| || |||||||| ||||||||||||||||||||| | |||||||||||||    
T  13187104 tatgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatgattgagttgaacattccaactcgtcttcagcagcttcc 13187005  T
Q  499 gaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttcca 598  Q
    | ||             ||||| || ||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  13187004 ggat-------------acggtaaactaaaacaggaatatttccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttcca 13186918  T
Q  599 ctataagatgagaataat 616  Q
    ||||||||||||| ||||    
T  13186917 ctataagatgagagtaat 13186900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 286 - 517
Target Start/End: Complemental strand, 6599248 - 6599017
Alignment:
Q  286 caaactaaaaagataatcaaacattcataggcatgcaagccccggataaataatcaaaaaggattctttggacctcattaggaggaaactccagcactaa 385  Q
    |||||||||||| ||| | ||||||| |||||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||||| |||||| ||||||    
T  6599248 caaactaaaaagctaaacgaacattcttaggcatgcaagccccggataaatcatcaaaaagtattttttggacctcactaggaggagactccaacactaa 6599149  T
Q  386 aaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcatt 485  Q
    ||||||||||||||| ||||||||| ||||||||||||| |||| ||||||| |||||||||| || ||| ||||||||||||||||||||||| ||||     
T  6599148 aaaatcaaagtgatatgtagaaatgcttaaattagcgagccaatcagcactcttatttccttcacgccaattatggttgagttgaacattccaattcatc 6599049  T
Q  486 ttcagcagcttccgaatccggtgaaataaaac 517  Q
    ||||||| |||||| |||||||||| ||||||    
T  6599048 ttcagcaacttccggatccggtgaactaaaac 6599017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 365 - 616
Target Start/End: Original strand, 7305029 - 7305267
Alignment:
Q  365 aggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttg 464  Q
    ||||||| |||||| ||||| ||||| ||||||||  ||||||||| ||||||||| ||| |||| |||||||||||||||||| || ||||||||||||    
T  7305029 aggaggagactccaacactagaaaattaaagtgatctgtagaaatgcttaaattagagagccaatcagcactcctatttccttcacgccaagtatggttg 7305128  T
Q  465 agttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaa 564  Q
    ||||||| |||||||||||| |||||||| ||||| |||             |||| || |||||||||||||||| |||||||||||||||||| ||||    
T  7305129 agttgaaaattccaactcatcttcagcaggttccggatc-------------cggtaaagtaaaacaggaatattctcattgaacttgaaattattagaa 7305215  T
Q  565 atcatgtcaatcaaactctttgaatcactttccactataagatgagaataat 616  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  7305216 atcatgtcgatcaaaatctttgaatcactttccactataagatgagagtaat 7305267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 299 - 517
Target Start/End: Original strand, 40426050 - 40426268
Alignment:
Q  299 taatcaaacattcataggcatgcaagccccggataaataatcaaaaaggattctttggacctcattaggaggaaactccagcactaaaaaatcaaagtga 398  Q
    ||||| ||||||| |||||||||||||||||||||||| |||||||| |||||||| |||||||  ||||||| |||||||||| | ||||| ||| |||    
T  40426050 taatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaagattcttttgacctcacaaggaggagactccagcacaagaaaattaaaatga 40426149  T
Q  399 tacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 498  Q
    |  ||||||||| |||||||||||||||||| |||||||||||||||||| |  ||| ||||| |||||||||||||||||||||| |||||||||||||    
T  40426150 tctgtagaaatgcttaaattagcgagtcaatcagcactcctatttccttcacaccaaatatgggtgagttgaacattccaactcatcttcagcagcttcc 40426249  T
Q  499 gaatccggtgaaataaaac 517  Q
    | || |||| || ||||||    
T  40426250 ggatacggtaaactaaaac 40426268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 288 - 579
Target Start/End: Original strand, 37307166 - 37307444
Alignment:
Q  288 aactaaaaagataatcaaacattcataggcatgcaagccccggataaataatcaaaaaggattctttggacctcattaggaggaaactccagcactaaaa 387  Q
    |||||||||| ||||| || |||| |||||||||||| || |||||||| ||| ||||||||||||||||||||  ||| |||| |||||| || ||  |    
T  37307166 aactaaaaagctaatcgaagattcctaggcatgcaagtcctggataaatcatctaaaaggattctttggacctcgctagaaggagactccaacattagta 37307265  T
Q  388 aatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcatttt 487  Q
    ||| |||||||| |||||||||| |||| ||| |||| |||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||    
T  37307266 aattaaagtgatccgtagaaatgcttaagttaacgagccaatcagcactcctatttccttcacgtcaagtatggttgagttgaacatttcaactcatctt 37307365  T
Q  488 cagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaa 579  Q
    | ||| ||| |  |||||||      ||||       |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  37307366 cggcaactttcagatccggt------aaac-------taaaacaggaatattctcattgaacttgaaattatcagaaatcatgtcgatcaaa 37307444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 291 - 616
Target Start/End: Original strand, 40190294 - 40190606
Alignment:
Q  291 taaaaagataatcaaacattcataggcatgcaagccccggataaataatcaaaaaggattctttggacctcattaggaggaaactccagcactaaaaaat 390  Q
    ||||||| ||||| ||||||| ||| |||||||| | ||||||||| || ||||||||||||| ||| |||| |||||||| | |||| |||||  ||||    
T  40190294 taaaaagctaatcgaacattcttagacatgcaagtctcggataaatcattaaaaaggattcttcggatctcactaggaggagattccaacactagtaaat 40190393  T
Q  391 caaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcag 490  Q
     |||||||| |||| ||||| |||| |||| ||||||||   ||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||    
T  40190394 taaagtgatccgtataaatgcttaagttagtgagtcaatctacactcctatttccttcatgtcaagtatggttgagttgaacattccaactcatcttcag 40190493  T
Q  491 cagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatc 590  Q
    ||| ||  | |||              |||| | ||||| ||||||||   |||||||||| ||||||||||||||||| || |||||| ||||||||||    
T  40190494 cagttttgggatc-------------tggtggactaaaataggaatatgttcattgaacttaaaattatcagaaatcatatcgatcaaaatctttgaatc 40190580  T
Q  591 actttccactataagatgagaataat 616  Q
    ||||||||||||||||||||| ||||    
T  40190581 actttccactataagatgagagtaat 40190606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 520 - 609
Target Start/End: Complemental strand, 17290137 - 17290048
Alignment:
Q  520 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 609  Q
    |||| ||||| ||| | ||||||||| |||||||| |  |||||||||||||| |||||  |||| || ||||||||||| |||||||||    
T  17290137 tgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaataagatga 17290048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 612
Target Start/End: Original strand, 26381377 - 26381454
Alignment:
Q  535 atattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatgagaa 612  Q
    |||||||| ||||| |  ||||| ||||||||||||||||||||| |||||||  | || |||||| | |||||||||    
T  26381377 atattcccgttgaaatgaaaattgtcagaaatcatgtcaatcaaaatctttgagccgctctccacttttagatgagaa 26381454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 414 - 498
Target Start/End: Complemental strand, 17290230 - 17290146
Alignment:
Q  414 aaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 498  Q
    |||||||| || ||||  ||||| ||||||||||| || ||| ||||||||| ||| |||| ||||  |||| ||||||||||||    
T  17290230 aaattagcaagccaatcggcacttctatttccttcacgccaaatatggttgatttgcacatgccaatccattctcagcagcttcc 17290146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 554 - 610
Target Start/End: Complemental strand, 42865896 - 42865840
Alignment:
Q  554 aattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatgag 610  Q
    |||| |||| ||||||||| | |||| ||||||| ||||| ||||||||||||||||    
T  42865896 aattttcagtaatcatgtcgaccaaaatctttgagtcactctccactataagatgag 42865840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 145; Significance: 5e-76; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 299 - 616
Target Start/End: Original strand, 18259022 - 18259326
Alignment:
Q  299 taatcaaacattcataggcatgcaagccccggataaataatcaaaaaggattctttggacctcattaggaggaaactccagcactaaaaaatcaaagtga 398  Q
    ||||| ||||||| |||||||||||||||||||||||| |||||||| |||||||| |||||||  ||||||| |||||| ||||| ||||| ||| |||    
T  18259022 taatcgaacattcctaggcatgcaagccccggataaatcatcaaaaatgattcttttgacctcacaaggaggagactccaacactagaaaattaaaatga 18259121  T
Q  399 tacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 498  Q
    |  || |||||| ||||||||||||| |||| ||||||| ||||||||||||| || |||||||||||||||||||| ||||| || |||||||||||||    
T  18259122 tctgtcgaaatgcttaaattagcgagccaatcagcactcatatttccttcgcgccaggtatggttgagttgaacatttcaacttatcttcagcagcttcc 18259221  T
Q  499 gaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttcca 598  Q
    | |||||||      ||||       ||||||| |||||||||||||||| ||| ||||||||||||||||||| |||||| ||||||||||||||||||    
T  18259222 ggatccggt------aaac-------taaaacaagaatattcccattgaatttggaattatcagaaatcatgtcgatcaaaatctttgaatcactttcca 18259308  T
Q  599 ctataagatgagaataat 616  Q
    ||||||||||||| ||||    
T  18259309 ctataagatgagagtaat 18259326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 299 - 616
Target Start/End: Complemental strand, 22540526 - 22540222
Alignment:
Q  299 taatcaaacattcataggcatgcaagccccggataaataatcaaaaaggattctttggacctcattaggaggaaactccagcactaaaaaatcaaagtga 398  Q
    ||||| ||||||  || |||||||||| |||||||||| |||||||| |||||||| |||||||  ||||||| ||| || ||||| |||||  || |||    
T  22540526 taatcgaacatttctatgcatgcaagctccggataaatcatcaaaaatgattcttttgacctcacaaggaggagacttcaacactagaaaatttaaatga 22540427  T
Q  399 tacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 498  Q
    |  ||||||||| |||||||||||||||||| | |||||||||||||||  || |||||||||||||||||||||||||||||||| |||||||||||||    
T  22540426 tctgtagaaatgcttaaattagcgagtcaatcaacactcctatttcctttacgccaagtatggttgagttgaacattccaactcatcttcagcagcttcc 22540327  T
Q  499 gaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttcca 598  Q
    | |||| ||      ||||       ||||||||||||||| |||| ||||||||||||||||||||||| ||| |||||| |||||||||||||||| |    
T  22540326 ggatccagt------aaac-------taaaacaggaatatttccatcgaacttgaaattatcagaaatcacgtcgatcaaaatctttgaatcactttcaa 22540240  T
Q  599 ctataagatgagaataat 616  Q
    ||||||||||||| ||||    
T  22540239 ctataagatgagagtaat 22540222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 299 - 616
Target Start/End: Original strand, 34080624 - 34080925
Alignment:
Q  299 taatcaaacattcataggcatgcaagccccggataaataatcaaaaaggattctttggacctcattaggaggaaactccagcactaaaaaatcaaagtga 398  Q
    ||||| ||||||  ||||||||||||| ||  |||||| ||||||||||||| ||||||||||| ||||||   |||||| ||||| ||||| |||||||    
T  34080624 taatcgaacatttctaggcatgcaagctccaaataaatcatcaaaaaggattttttggacctcactaggag---actccaacactataaaattaaagtga 34080720  T
Q  399 tacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 498  Q
    || ||| |||||||||||||||| || |||| | ||||| | |||||||| || |||||||||||||||||||||||||||| ||| ||||||||||||     
T  34080721 tatgtaaaaatgtttaaattagcaagccaatcaacactcatgtttccttcacgccaagtatggttgagttgaacattccaacccatcttcagcagcttct 34080820  T
Q  499 gaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttcca 598  Q
    | |||             ||||||| ||||||| |||||||| ||||||||||||| |||||||||||||| || |||||| ||||| ||||||||||||    
T  34080821 ggatc-------------cggtgaactaaaacaagaatattcgcattgaacttgaatttatcagaaatcatatccatcaaaatctttaaatcactttcca 34080907  T
Q  599 ctataagatgagaataat 616  Q
    ||||||||||||| ||||    
T  34080908 ctataagatgagagtaat 34080925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 404 - 609
Target Start/End: Original strand, 4560304 - 4560496
Alignment:
Q  404 agaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttccgaatc 503  Q
    ||||||| | |||||||| ||||||| |||||| ||||||||||| || ||||||||||||| ||| |||| ||||  |||| ||||||||||||         
T  4560304 agaaatgctaaaattagcaagtcaatcagcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcc----- 4560398  T
Q  504 cggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactata 603  Q
            | | ||| |||| ||||| ||| ||||||||||| |||||||| || |||||||||||||| |||||  |||| || ||||||||||| |||    
T  4560399 --------tgatacgatgaactaaaataggcatattcccattaaacttgaacttttcagaaatcatgtcgatcaatatcttcgagtcactttccacaata 4560490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 520 - 609
Target Start/End: Complemental strand, 18883489 - 18883400
Alignment:
Q  520 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 609  Q
    |||| ||||| ||| ||||||||||| ||||| || || || ||||||||||| |||||  ||||||| ||| |||||||||||||||||    
T  18883489 tgaactaaaatagggatattcccattaaacttaaacttgtccgaaatcatgtcgatcaatatctttgagtcattttccactataagatga 18883400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 498
Target Start/End: Complemental strand, 18934264 - 18934170
Alignment:
Q  404 agaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 498  Q
    ||||||| | |||||||| || ||||  ||||| ||||||||||| || ||||||||||||| ||| |||| ||||  |||| ||||||||||||    
T  18934264 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcc 18934170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 609
Target Start/End: Complemental strand, 18934161 - 18934072
Alignment:
Q  520 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 609  Q
    |||| ||||| ||| | ||||||||| |||||||| |  |||||||||||||| |||||  |||| |  ||||||||||| |||||||||    
T  18934161 tgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgggtcactttccacaataagatga 18934072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 554 - 610
Target Start/End: Complemental strand, 14024914 - 14024858
Alignment:
Q  554 aattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatgag 610  Q
    |||| |||| ||||||||| | |||| ||||||| ||||| ||||||||||||||||    
T  14024914 aattttcagtaatcatgtcgaccaaaatctttgagtcactctccactataagatgag 14024858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 520 - 609
Target Start/End: Original strand, 1223053 - 1223142
Alignment:
Q  520 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 609  Q
    |||| ||||| ||| | ||||||||| |||||||| |  |||||||||||||| |||||  |||| || ||||||||||| |||||||||    
T  1223053 tgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaataagatga 1223142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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