View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5263_low_10 (Length: 248)
Name: NF5263_low_10
Description: NF5263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5263_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 3 - 232
Target Start/End: Original strand, 39630990 - 39631219
Alignment:
| Q |
3 |
caatgaactcattagaaatggttagatacgagtttcttcatttgttgcaagataagacatgccttaattaagatttcaaaaacagtataatgaaatcaat |
102 |
Q |
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| T |
39630990 |
caatgaactcattagaaatggttagatacgagtttcttcatttgttgcaagataagacatgccttaattaagatttcaaaaacagtagaatgaaatcaat |
39631089 |
T |
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| Q |
103 |
tctgtttcttcaagtgatatagtaagtctttcccatatgcaggaatccaaccacatgtcacactgcacaactatgacctcccacaagcacttgaggatga |
202 |
Q |
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| T |
39631090 |
tctgtttcttcaagtgatataataagtctttcccatatgcaggaatccaaccacatgtcacactgcacaactatgacctcccacaagcacttgaggatga |
39631189 |
T |
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| Q |
203 |
atacggaggatggcttagtcgtgaggtcat |
232 |
Q |
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| T |
39631190 |
atacggaggatggcttagtcgtgaggtcat |
39631219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 3 - 232
Target Start/End: Original strand, 39641775 - 39642005
Alignment:
| Q |
3 |
caatgaactcattagaaatggttagatacgagtttcttcatttgttgcaagataagacatgccttaattaagatttcaaaaacagtataatgaaatcaat |
102 |
Q |
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| T |
39641775 |
caatgaactcattagaaatggttagatacgagcttcttcatttgctgcaagataagacatgccttaatcaagatttcaaaaacagta-agtgaaatcaat |
39641873 |
T |
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| Q |
103 |
tctgtttcttcaagtgatatagt--aagtctttcccatatgcaggaatccaaccacatgtcacactgcacaactatgacctcccacaagcacttgaggat |
200 |
Q |
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| T |
39641874 |
tctgtttcttcaagtgatataatacaagtcttttccatttgtaggaatccaaccacatgtcacactacacaactatgatctcccacaggcacttgaggat |
39641973 |
T |
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| Q |
201 |
gaatacggaggatggcttagtcgtgaggtcat |
232 |
Q |
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| T |
39641974 |
gaatatgaaggatggcttagtcgtgaggtcat |
39642005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 54 - 232
Target Start/End: Original strand, 29122182 - 29122362
Alignment:
| Q |
54 |
ataagacatgccttaattaagatttcaaaaacagtataatgaaatcaattctgtttcttcaagtgatatagta--agtctttcccatatgcaggaatcca |
151 |
Q |
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| T |
29122182 |
ataagacatgccttaattaagatttcaaaaacagtagagtgaaatcgattttgtttcttaaactaatataatacaagtctttcacatttgcaggaatcca |
29122281 |
T |
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| Q |
152 |
accacatgtcacactgcacaactatgacctcccacaagcacttgaggatgaatacggaggatggcttagtcgtgaggtcat |
232 |
Q |
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| T |
29122282 |
accacatgtcacactacacaactatgatctcccacaggcacttgaggatgaatatgaaggatggcttagtcgtcaggtcat |
29122362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 33
Target Start/End: Original strand, 29122146 - 29122176
Alignment:
| Q |
3 |
caatgaactcattagaaatggttagatacga |
33 |
Q |
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| T |
29122146 |
caatgaactcattagaaatggttagatacga |
29122176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 5219822 - 5219782
Alignment:
| Q |
183 |
ccacaagcacttgaggatgaatacggaggatggcttagtcg |
223 |
Q |
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| T |
5219822 |
ccacaagcacttgaagatgaatatggaggatgggttagtcg |
5219782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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