View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5263_low_2 (Length: 446)
Name: NF5263_low_2
Description: NF5263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5263_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 8e-62; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 198 - 339
Target Start/End: Original strand, 1251647 - 1251784
Alignment:
| Q |
198 |
atttgagcataaaacttaaaggtaacatgatatgtagttgtagttaagtatggaggatgacatattttcttcaaattaaacgtaaagaatgatgtgaatg |
297 |
Q |
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| T |
1251647 |
atttgagcataaaacttaaaggtaacatgatatgtagttgtagttaagtatggaggatgacatattttcttca----aaacgtaaagaacgatgtgaatg |
1251742 |
T |
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| Q |
298 |
tagtccttttatgctccatacagtcttagagaaataccatta |
339 |
Q |
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| T |
1251743 |
tagtccttttatgctccatacagtcttagagaaataccatta |
1251784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 45 - 199
Target Start/End: Original strand, 1251475 - 1251620
Alignment:
| Q |
45 |
acaatgttggaagaagcaagattttgcatacatgaaaattaaccctgccattttgttagctatgtttgatttaatttatttgttttcctattcaatttta |
144 |
Q |
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| T |
1251475 |
acaatgttggaagaagcaagattttgcatacatgaaaattaatcctgccattttgttagctatgtttgat----tttatttgttttcct-----atttta |
1251565 |
T |
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| Q |
145 |
aattaccatctcatccatgtgaattgtgaaatgaagacaccctttacctctttat |
199 |
Q |
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| T |
1251566 |
aattaccatctcatccatgtgaattgtgaaatgaagacaccctttacctctttat |
1251620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 338 - 430
Target Start/End: Original strand, 1252274 - 1252366
Alignment:
| Q |
338 |
taggggcatgcttaaatcggaggtctaagacccgtttattaaaatctagggaaaactacatttacctcccttgaggtttccccttaaacaaac |
430 |
Q |
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| T |
1252274 |
taggggcatgcttaaatcggaggtgtaagacccgtttattaaaatctagggaaaactacatttacctcccatgaggtttccccttaaacaaac |
1252366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 15029003 - 15029052
Alignment:
| Q |
15 |
tatggaccctgacattgctaatattattagacaatgttggaagaagcaag |
64 |
Q |
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| T |
15029003 |
tatggcccctgatattactaatattattagacaatgtttgaagaagcaag |
15029052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 15007768 - 15007817
Alignment:
| Q |
15 |
tatggaccctgacattgctaatattattagacaatgttggaagaagcaag |
64 |
Q |
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| T |
15007768 |
tatggcccctgatattactaatattattagacaatgtttgaagaaacaag |
15007817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 15021885 - 15021934
Alignment:
| Q |
15 |
tatggaccctgacattgctaatattattagacaatgttggaagaagcaag |
64 |
Q |
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| T |
15021885 |
tatggcccctgatattactaatattattagacaatgtttgaagaatcaag |
15021934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 388 - 416
Target Start/End: Original strand, 50135031 - 50135059
Alignment:
| Q |
388 |
gaaaactacatttacctcccttgaggttt |
416 |
Q |
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| T |
50135031 |
gaaaactacatttacctcccttgaggttt |
50135059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 336
Target Start/End: Complemental strand, 35889309 - 35889262
Alignment:
| Q |
288 |
gatgtgaatgtagtccttttatgctccatacagtcttagagaaatacca |
336 |
Q |
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| T |
35889309 |
gatgtgaatgtagtccttttatgctccatacaatc-taaagaaatacca |
35889262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 316
Target Start/End: Original strand, 4169669 - 4169754
Alignment:
| Q |
227 |
atatgtagttgtagttaagtatggaggatgacatattttcttcaaattaaacgtaaagaatgatgtgaat-gtagtccttttatgctccat |
316 |
Q |
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| T |
4169669 |
atatgtagttgcagttaagtatgaagaatgacaggttttcttca----aaacgt-aagaataatgtgaatggcagtccttttatgctccat |
4169754 |
T |
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