View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5264_high_13 (Length: 218)
Name: NF5264_high_13
Description: NF5264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5264_high_13 |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 5 - 208
Target Start/End: Complemental strand, 51168247 - 51168043
Alignment:
| Q |
5 |
aaaattatcccttattgggaaaacaggtctgcaacaaaccaatactatgaattaacactagaagaacatgatcttgtaacaataatatatttaggatcaa |
104 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
51168247 |
aaaattatcccttattggcaaaacaggtctgcaacaaaccaatactaggaattaacactagaataacatgatcttgtaacaataatatatttaggatcaa |
51168148 |
T |
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| Q |
105 |
aataataattgtatagcattgccagcaaaacaataacaacaatacctcttaatcaaccaaactagaagctttaacattggaatttgaaa-ttgaccattg |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
51168147 |
aataataattgtatagcattgccagcaaaacaataacaacaatacctcttaatcaaccaaactagaagctttaacattggaatttgaaagttgaccattg |
51168048 |
T |
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| Q |
204 |
atgat |
208 |
Q |
| |
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||||| |
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| T |
51168047 |
atgat |
51168043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 752937 - 753111
Alignment:
| Q |
1 |
cggcaaaattatcccttattgggaaaacaggtctgcaacaaaccaatactatgaattaacactagaagaacatgatcttgtaacaataatatatttagga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
752937 |
cggcaaaattatcccttattgggaaaacaggtctgcaacaaaccaatactaggaattaacactagaagaacatgatcttgtaacaataatatatttagga |
753036 |
T |
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| Q |
101 |
tcaaaataataattgtatagcattgccagcaaaacaataacaacaatacctcttaatcaaccaaactagaagctt |
175 |
Q |
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| T |
753037 |
tcaaaattataattgtatagcattaccagcaaaacaataacaacaatacctcttaatcaaccaaactagaagctt |
753111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 850572 - 850398
Alignment:
| Q |
1 |
cggcaaaattatcccttattgggaaaacaggtctgcaacaaaccaatactatgaattaacactagaagaacatgatcttgtaacaataatatatttagga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
850572 |
cggcaaaattatcccttattgggaaaacaggtctgcaacaaaccaatactaggaattaacactagaagaacatgatcttgtaacaataatatatttagga |
850473 |
T |
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| Q |
101 |
tcaaaataataattgtatagcattgccagcaaaacaataacaacaatacctcttaatcaaccaaactagaagctt |
175 |
Q |
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||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
850472 |
tcaaaattataattgtatagcattaccagcaaaacaataacaacaatacctcttaatcaaccaaactagaagctt |
850398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 66079 - 66047
Alignment:
| Q |
176 |
taacattggaatttgaaattgaccattgatgat |
208 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
66079 |
taacattggaatttgaaattgaccattgatgat |
66047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 171
Target Start/End: Complemental strand, 1111 - 946
Alignment:
| Q |
4 |
caaaattatcccttattgggaaaacaggtctgcaacaaaccaatactatgaattaacactagaagaacatgatcttgtaacaataatatatttaggatca |
103 |
Q |
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||||| ||||| ||| ||| ||| |||||||||||||||||| | | |||||||||| | |||| | |||||||||||||||||| || | ||| |
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| T |
1111 |
caaaactatcctttagtggcaaagcaggtctgcaacaaaccagcatcaggaattaacacaa--agaatacaatcttgtaacaataatattggtatgctca |
1014 |
T |
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| Q |
104 |
aaataataattgtatagcattgccagcaaaacaataacaacaatacctcttaatcaaccaaactagaa |
171 |
Q |
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|||||||||| ||||||||||||| ||||| ||||| | |||||||||||||||||||||||||||| |
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| T |
1013 |
aaataataatcatatagcattgccaacaaaataataataccaatacctcttaatcaaccaaactagaa |
946 |
T |
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