View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5264_high_7 (Length: 328)
Name: NF5264_high_7
Description: NF5264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5264_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 29711599 - 29711290
Alignment:
| Q |
1 |
caaaatcccattctcatttcattaatcaaagaccaaatcagtcagagtaatacatactttgccaaactagttggaaaaacaggtataataacaatttcac |
100 |
Q |
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| T |
29711599 |
caaaatcccattctcatttcattaatcaaagaccaaataagtcacagtaatacatactttgccaaa----ttggaaaaacgggtataataacaatttcac |
29711504 |
T |
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| Q |
101 |
acaaccttttgaaaccggatataactgataacgaccgaggttaccatttcatgcaacaacgatagatgacactgcaaatctcacaaacatctgagaaata |
200 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29711503 |
acaatcttttgaaaccggatataactgataatgaccgaggttaccatttcatgcaacaacgatagatgacactgcaaatctcacaaacatctgagaaata |
29711404 |
T |
|
| Q |
201 |
tgtgaaatactacattatatgtatgtttatttgttccagtactgttataaatgtgttgttagtattgtgaaaagatagttgtggtgtaaatctgagtgat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29711403 |
tgtgaaatactacattatatgtatgtttatttgttccagtactgttataaatgtgttgttattattgtgaaaagatagttgtggtgtaaatctgagtgat |
29711304 |
T |
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| Q |
301 |
gagagatacacaggtt |
316 |
Q |
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|||||||||||||| |
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| T |
29711303 |
--gagatacacaggtt |
29711290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 29697240 - 29697418
Alignment:
| Q |
1 |
caaaatcccattctcatttcattaatcaaagaccaaatcagtcagagtaatacatactttgccaaactagttggaaaaacaggtataataacaatttcac |
100 |
Q |
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||||||| |||||||||||||| ||||||||||||| |||| ||||||||| | | ||||| |||| |||||| | |||| |||||||||||||| |
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| T |
29697240 |
caaaatctcattctcatttcataaatcaaagaccaactcag----agtaatacacatcctaccaaattagtaggaaaa-cgggtacaataacaatttcac |
29697334 |
T |
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| Q |
101 |
acaaccttttgaaaccggatataactgataacgaccgaggttaccatttcatgcaacaacgatagatgacactgcaaatctcac |
184 |
Q |
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| T |
29697335 |
acaaccttttgaaaccggatataaacggtgattatcgaggttaccatttcatgagacaacaatagacgacactgtaaatctcac |
29697418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 248
Target Start/End: Original strand, 29689171 - 29689320
Alignment:
| Q |
99 |
acacaaccttttgaaaccggatataactgataacgaccgaggttaccatttcatgcaacaacgatagatgacactgcaaatctcacaaacatctgagaaa |
198 |
Q |
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||||||||||||||||||||||||||| | | | | |||||||||||||||||| ||||| ||||| ||||||||||||||||| | ||| || |||| |
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| T |
29689171 |
acacaaccttttgaaaccggatataaccggtgattatcgaggttaccatttcatgagacaacaatagacgacactgcaaatctcactatcatatgtgaaa |
29689270 |
T |
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| Q |
199 |
tatgtgaaatactacatta-tatgtatgtttatttgttccagtactgttat |
248 |
Q |
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| T |
29689271 |
cctgtgaaatact-cagtattatgtttgtttatttgtttgattactgttat |
29689320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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