View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5264_low_1 (Length: 505)
Name: NF5264_low_1
Description: NF5264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5264_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 80 - 500
Target Start/End: Original strand, 48469060 - 48469480
Alignment:
| Q |
80 |
tcatgcagctaatagagttttggggctatcgagattaaaaatatcaaaacaatttattcaatgcattgaaattcacataaaagaatacataattactatc |
179 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48469060 |
tcatgcatctaatagagttttggggctatcgagattaaaaatatcaaaacaatttattcaatgcattgaaattcacataaaagaatacataattactatc |
48469159 |
T |
|
| Q |
180 |
cttaccagttaccacaataattcctctnnnnnnnnngttaccacagcaattgtcaattttgctaatcttcaatttacatttcaccgtttttatttgcatg |
279 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48469160 |
cttaccagttaccacaataattcctctaaaaaaaaagttaccacagcaattgtcaattttgctaatcttcaatttacatttcaccgttttcatttgcatg |
48469259 |
T |
|
| Q |
280 |
aaatttttcagaaacatgaatttccaaatgataccttgtatactgcaccaaatccaccctctccaaccttattttcttttgagaagtaacttgttgcaag |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48469260 |
aaatttttcagaaacatgaatttccaaatgataccttgtacactgcaccaaatccaccctctccaaccttattttcttttgagaagtaacttgttgcaag |
48469359 |
T |
|
| Q |
380 |
ttttattgtgagataatcaaatactatcaaattagaaccattttcattgagatcttcgtcaggtgctgataaatgtatcctcaatctgtacaccattctt |
479 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48469360 |
ttttattgtgagataatcaaatactatcaaatcagaaccattttcattgagaccttcgtcaggtgctgataaatgtatcctcaatctgtacatcattctt |
48469459 |
T |
|
| Q |
480 |
gtaatagttatctctgctcct |
500 |
Q |
| |
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|||||||| ||| ||| |||| |
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|
| T |
48469460 |
gtaatagtaatcactgttcct |
48469480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 107 - 500
Target Start/End: Original strand, 48477412 - 48477804
Alignment:
| Q |
107 |
atcgagattaaaaatatcaaaacaatttattcaatgcattgaaattcacataaaagaatacataattactatccttaccagttaccacaataattcctct |
206 |
Q |
| |
|
||||||||||||| |||| ||||| ||||| ||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
48477412 |
atcgagattaaaa-tatctcaacaagttatttaatgcatagaaattctcataaaagaatacgaaattactatccttaccagttaccacagtaattcctct |
48477510 |
T |
|
| Q |
207 |
nnnnnnnnngttaccacagcaattgtcaattttgctaatcttcaatttacatttcaccgtttttatttgcatgaaatttttcagaaacatgaatttccaa |
306 |
Q |
| |
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|||||||| | |||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| ||||| ||||| || ||||||| |
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| T |
48477511 |
aaaataaaagttaccacggtaattgtcaattttgctaatcttcaattttcatatcacagtttttatttgcatgaaatatttcacaaacaggagtttccaa |
48477610 |
T |
|
| Q |
307 |
atgataccttgtatactgcaccaaatccaccctctccaaccttattttcttttgagaagtaacttgttgcaagttttattgtgagataatcaaatactat |
406 |
Q |
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||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48477611 |
atgttaccttgtacactgcaccaaatccaccctctccaaccttattttctgttgagaagtaacttgttgcaagttttattgtgagataatcaaatactat |
48477710 |
T |
|
| Q |
407 |
caaattagaaccattttcattgagatcttcgtcaggtgctgataaatgtatcctcaatctgtacaccattcttgtaatagttatctctgctcct |
500 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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|
| T |
48477711 |
caaatcagaaccattttcattgagatcttcgtcaggtgctgataaatgtatcctcaatctgtacaccattcttgtaatagttatcactgttcct |
48477804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 304 - 491
Target Start/End: Complemental strand, 48884551 - 48884368
Alignment:
| Q |
304 |
caaatgataccttgtatactgcaccaaatccaccctctccaaccttattttcttttgagaagtaacttgttgcaagttttattgtgagataatcaaatac |
403 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| | |||| | |||||||||||||||||||||||| |
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|
| T |
48884551 |
caaatgttaccttgtacactgcaccaaatccaccctctccggccttattttcttttgagaagtaacctcttgctacttttattgtgagataatcaaatac |
48884452 |
T |
|
| Q |
404 |
tatcaaattagaaccattttcattgagatcttcgtcaggtgctgataaatgtatcctcaatctgtacaccattcttgtaatagttatc |
491 |
Q |
| |
|
|||||||| |||||||||| | |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
48884451 |
tatcaaatcagaaccatttcc----agatcttcttcaggtgctgataaatgtatcctcaatctgtacatcattcttgtaatagttatc |
48884368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 216 - 483
Target Start/End: Original strand, 48485265 - 48485533
Alignment:
| Q |
216 |
gttaccacagcaattgtcaattttgctaatcttcaatttacatttcaccgtttttatttgcatgaaatttttcagaaaca--tgaatttccaaatgatac |
313 |
Q |
| |
|
|||| ||||| |||||| || ||| ||||||||||||||||||||||| |||| ||||| |||||||| ||||| |||| || |||| || ||| ||| |
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|
| T |
48485265 |
gttatcacagtaattgtgaacttttctaatcttcaatttacatttcacagtttctattt-catgaaatatttcaccaacagatgtattttcatatgttac |
48485363 |
T |
|
| Q |
314 |
cttgtatactgcaccaaatccaccctctccaaccttattttcttttgagaagtaacttgttgcaagttttattgtgagataatcaaatactatcaaatta |
413 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||| |||||||||||||||||||| | |||||| | ||| ||||||||||||| ||||||||| |||| | |
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|
| T |
48485364 |
cttgtacactacaccaaatccaccctctccaagcttattttcttttgagaagttatctgttgccactttaattgtgagataattaaatactattaaatca |
48485463 |
T |
|
| Q |
414 |
gaaccattttcattgagatcttcgtcaggtgctgataaatgtatcctcaatctgtacaccattcttgtaa |
483 |
Q |
| |
|
||||||||| ||||||||||||| |||| ||||||||||| |||||||| | |||| | ||||||||||| |
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| T |
48485464 |
gaaccatttccattgagatcttcttcagctgctgataaatatatcctcattttgtatatcattcttgtaa |
48485533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 48884679 - 48884574
Alignment:
| Q |
31 |
tttcatctgcataagatgtaggtctgattcctgcatcgagattaaaatatcatgcagctaatagagttttggggctatcgagattaaaaatatcaaaaca |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||| |
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|
| T |
48884679 |
tttcatctgcataagatgtaggtctgattcatgcatcgagattaaaatatcatgtagctaatagagttttggggctatcgagatt-aaaatatctcaaca |
48884581 |
T |
|
| Q |
131 |
atttatt |
137 |
Q |
| |
|
||||||| |
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|
| T |
48884580 |
atttatt |
48884574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 48469019 - 48469061
Alignment:
| Q |
18 |
ttttcttgcaaaatttcatctgcataagatgtaggtctgattc |
60 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48469019 |
ttttcttgcaaaatttcatctgcataagatgtaggtctgattc |
48469061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 48477378 - 48477428
Alignment:
| Q |
31 |
tttcatctgcataagatgtaggtctgattcctgcatcgagattaaaatatc |
81 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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|
| T |
48477378 |
tttcatctgcataagatggaggtctgattcatgcatcgagattaaaatatc |
48477428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 48485225 - 48485279
Alignment:
| Q |
147 |
gaaattcacataaaagaatacataattactatccttaccagttaccacaataatt |
201 |
Q |
| |
|
|||||||| || ||||||||||| ||| |||||||||||||||| |||| ||||| |
|
|
| T |
48485225 |
gaaattcatattaaagaatacatcattgctatccttaccagttatcacagtaatt |
48485279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 89 - 500
Target Start/End: Complemental strand, 38818219 - 38817802
Alignment:
| Q |
89 |
taatagagttttggggctat--cgagattaaaaatatcaaaacaatttattcaatgcattgaaattcacataaaagaatacataattactatccttacca |
186 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||| | ||||||||| ||||||| |||||| |||||||||||||||| || ||||||||| ||| |
|
|
| T |
38818219 |
taatagagttttggggctaaaacgagattaaaa-tatctcagcaatttatttaatgcatagaaattgacataaaagaatacatcataactatccttgcca |
38818121 |
T |
|
| Q |
187 |
gttaccacaataattcctctnnnnnnnnn--gttaccacagcaattgtcaattttgctaatcttcaatttacatttcaccgtttttattt-gcatgaaat |
283 |
Q |
| |
|
||||||||| |||||||| | ||||||| | |||| |||| |||| ||||||| |||||||||||||| |||| ||||| ||||||||| |
|
|
| T |
38818120 |
gttaccacagtaattccttttaaaaaaaaaagttaccagtgtaattctcaactttgttaatcttgaatttacatttcacagtttctatttagcatgaaat |
38818021 |
T |
|
| Q |
284 |
ttttcagaaaca--tgaatttccaaatgataccttgtatactgcaccaaatccaccctctccaaccttattttcttttgagaagtaacttgttgcaagtt |
381 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38818020 |
atttcagaaacacgtgaatttccaaatgttaccttgtacactgcaccaaatccaccctctccaaccttattttcttttgagaagtaacttgttgcaagtt |
38817921 |
T |
|
| Q |
382 |
ttattgtgagataatcaaatactatcaaattagaaccattttcattgagatcttcgtcaggtgctgataaatgtatcctcaatctgtacaccattcttgt |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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|
| T |
38817920 |
ttattgtgagataatcaaatactatcaaatcagaaccattttcattgagatcttcgtcaggtgctgataaatgtatccccaatctgtacatcattcttgt |
38817821 |
T |
|
| Q |
482 |
aatagttatctctgctcct |
500 |
Q |
| |
|
|||||| ||| ||| |||| |
|
|
| T |
38817820 |
aatagtaatcactgttcct |
38817802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 38819154 - 38819114
Alignment:
| Q |
18 |
ttttcttgcaaaatttcatctgcataagatgtaggtctgat |
58 |
Q |
| |
|
||||||||||||| |||| |||||||||||| ||||||||| |
|
|
| T |
38819154 |
ttttcttgcaaaacttcacctgcataagatggaggtctgat |
38819114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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